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BurkHostGEN: a study protocol for evaluating variations in the Burkholderia pseudomallei and host genomes associated with melioidosis infection.
Angchagun K, Boonklang P, Chomkatekaew C, Pakdeerat S, Wongsuwan G, Amornchai P, Wuthiekanun V, Panapipat S, Ngernseng T, Waithira N, Walton S, Limmathurotsakul D, Surawong A, Siriboon S, Chamnan P, Chantratita N, Dunachie S, Corander J, Davenport EE, Knight J, Parkhill J, Peacock SJ, Thomson NR, Day NPJ, Chewapreecha C. Angchagun K, et al. Among authors: corander j. Wellcome Open Res. 2023 Nov 2;8:347. doi: 10.12688/wellcomeopenres.19809.2. eCollection 2023. Wellcome Open Res. 2023. PMID: 37928212 Free PMC article.
Dense genomic sampling identifies highways of pneumococcal recombination.
Chewapreecha C, Harris SR, Croucher NJ, Turner C, Marttinen P, Cheng L, Pessia A, Aanensen DM, Mather AE, Page AJ, Salter SJ, Harris D, Nosten F, Goldblatt D, Corander J, Parkhill J, Turner P, Bentley SD. Chewapreecha C, et al. Among authors: corander j. Nat Genet. 2014 Mar;46(3):305-309. doi: 10.1038/ng.2895. Epub 2014 Feb 9. Nat Genet. 2014. PMID: 24509479 Free PMC article.
Two-phase importance sampling for inference about transmission trees.
Numminen E, Chewapreecha C, Sirén J, Turner C, Turner P, Bentley SD, Corander J. Numminen E, et al. Among authors: corander j. Proc Biol Sci. 2014 Nov 7;281(1794):20141324. doi: 10.1098/rspb.2014.1324. Proc Biol Sci. 2014. PMID: 25253455 Free PMC article.
Patterns of genome evolution that have accompanied host adaptation in Salmonella.
Langridge GC, Fookes M, Connor TR, Feltwell T, Feasey N, Parsons BN, Seth-Smith HM, Barquist L, Stedman A, Humphrey T, Wigley P, Peters SE, Maskell DJ, Corander J, Chabalgoity JA, Barrow P, Parkhill J, Dougan G, Thomson NR. Langridge GC, et al. Among authors: corander j. Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):863-8. doi: 10.1073/pnas.1416707112. Epub 2014 Dec 22. Proc Natl Acad Sci U S A. 2015. PMID: 25535353 Free PMC article.
Novel R pipeline for analyzing Biolog Phenotypic MicroArray data.
Vehkala M, Shubin M, Connor TR, Thomson NR, Corander J. Vehkala M, et al. Among authors: corander j. PLoS One. 2015 Mar 18;10(3):e0118392. doi: 10.1371/journal.pone.0118392. eCollection 2015. PLoS One. 2015. PMID: 25786143 Free PMC article.
Climate induces seasonality in pneumococcal transmission.
Numminen E, Chewapreecha C, Turner C, Goldblatt D, Nosten F, Bentley SD, Turner P, Corander J. Numminen E, et al. Among authors: corander j. Sci Rep. 2015 Jun 12;5:11344. doi: 10.1038/srep11344. Sci Rep. 2015. PMID: 26067932 Free PMC article. Clinical Trial.
Global and regional dissemination and evolution of Burkholderia pseudomallei.
Chewapreecha C, Holden MT, Vehkala M, Välimäki N, Yang Z, Harris SR, Mather AE, Tuanyok A, De Smet B, Le Hello S, Bizet C, Mayo M, Wuthiekanun V, Limmathurotsakul D, Phetsouvanh R, Spratt BG, Corander J, Keim P, Dougan G, Dance DA, Currie BJ, Parkhill J, Peacock SJ. Chewapreecha C, et al. Among authors: corander j. Nat Microbiol. 2017 Jan 23;2:16263. doi: 10.1038/nmicrobiol.2016.263. Nat Microbiol. 2017. PMID: 28112723 Free PMC article.
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis.
Skwark MJ, Croucher NJ, Puranen S, Chewapreecha C, Pesonen M, Xu YY, Turner P, Harris SR, Beres SB, Musser JM, Parkhill J, Bentley SD, Aurell E, Corander J. Skwark MJ, et al. Among authors: corander j. PLoS Genet. 2017 Feb 16;13(2):e1006508. doi: 10.1371/journal.pgen.1006508. eCollection 2017 Feb. PLoS Genet. 2017. PMID: 28207813 Free PMC article.
Directional gene flow and ecological separation in Yersinia enterocolitica.
Reuter S, Corander J, de Been M, Harris S, Cheng L, Hall M, Thomson NR, McNally A. Reuter S, et al. Among authors: corander j. Microb Genom. 2015 Sep 29;1(3):e000030. doi: 10.1099/mgen.0.000030. eCollection 2015 Sep. Microb Genom. 2015. PMID: 28348815 Free PMC article.
237 results