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Prioritizing cardiovascular disease-associated variants altering NKX2-5 and TBX5 binding through an integrative computational approach.
Peña-Martínez EG, Pomales-Matos DA, Rivera-Madera A, Messon-Bird JL, Medina-Feliciano JG, Sanabria-Alberto L, Barreiro-Rosario AC, Rivera-Del Valle J, Rodríguez-Ríos JM, Rodríguez-Martínez JA. Peña-Martínez EG, et al. Among authors: rodriguez martinez ja. J Biol Chem. 2023 Dec;299(12):105423. doi: 10.1016/j.jbc.2023.105423. Epub 2023 Nov 4. J Biol Chem. 2023. PMID: 37926287 Free PMC article.
Disease-associated non-coding variants alter NKX2-5 DNA-binding affinity.
Peña-Martínez EG, Rivera-Madera A, Pomales-Matos DA, Sanabria-Alberto L, Rosario-Cañuelas BM, Rodríguez-Ríos JM, Carrasquillo-Dones EA, Rodríguez-Martínez JA. Peña-Martínez EG, et al. Among authors: rodriguez martinez ja. Biochim Biophys Acta Gene Regul Mech. 2023 Mar;1866(1):194906. doi: 10.1016/j.bbagrm.2023.194906. Epub 2023 Jan 21. Biochim Biophys Acta Gene Regul Mech. 2023. PMID: 36690178 Free PMC article.
Prioritizing Cardiovascular Disease-Associated Variants Altering NKX2-5 Binding through an Integrative Computational Approach.
Peña-Martínez EG, Pomales-Matos DA, Rivera-Madera A, Messon-Bird JL, Medina-Feliciano JG, Sanabria-Alberto L, Barreiro-Rosario AC, Rodriguez-Rios JM, Rodríguez-Martínez JA. Peña-Martínez EG, et al. Among authors: rodriguez martinez ja. medRxiv [Preprint]. 2023 Sep 2:2023.09.01.23294951. doi: 10.1101/2023.09.01.23294951. medRxiv. 2023. PMID: 37693486 Free PMC article. Updated. Preprint.
CREPE: a Shiny app for transcription factor cataloguing.
Rosado-Tristani DA, Rodríguez-Martínez JA. Rosado-Tristani DA, et al. Among authors: rodriguez martinez ja. Bioinform Adv. 2023 Apr 21;3(1):vbad055. doi: 10.1093/bioadv/vbad055. eCollection 2023. Bioinform Adv. 2023. PMID: 37153629 Free PMC article.
Hidden modes of DNA binding by human nuclear receptors.
Bhimsaria D, Rodríguez-Martínez JA, Mendez-Johnson JL, Ghoshdastidar D, Varadarajan A, Bansal M, Daniels DL, Ramanathan P, Ansari AZ. Bhimsaria D, et al. Among authors: rodriguez martinez ja. Nat Commun. 2023 Jul 13;14(1):4179. doi: 10.1038/s41467-023-39577-0. Nat Commun. 2023. PMID: 37443151 Free PMC article.
A butterfly pan-genome reveals that a large amount of structural variation underlies the evolution of chromatin accessibility.
Ruggieri AA, Livraghi L, Lewis JJ, Evans E, Cicconardi F, Hebberecht L, Ortiz-Ruiz Y, Montgomery SH, Ghezzi A, Rodriguez-Martinez JA, Jiggins CD, McMillan WO, Counterman BA, Papa R, Van Belleghem SM. Ruggieri AA, et al. Among authors: rodriguez martinez ja. Genome Res. 2022 Oct;32(10):1862-1875. doi: 10.1101/gr.276839.122. Epub 2022 Sep 15. Genome Res. 2022. PMID: 36109150 Free PMC article.
De novo design of programmable inducible promoters.
Liu X, Gupta STP, Bhimsaria D, Reed JL, Rodríguez-Martínez JA, Ansari AZ, Raman S. Liu X, et al. Nucleic Acids Res. 2019 Nov 4;47(19):10452-10463. doi: 10.1093/nar/gkz772. Nucleic Acids Res. 2019. PMID: 31552424 Free PMC article.
29 results