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Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny.
Hunt M, Hinrichs AS, Anderson D, Karim L, Dearlove BL, Knaggs J, Constantinides B, Fowler PW, Rodger G, Street T, Lumley S, Webster H, Sanderson T, Ruis C, de Maio N, Amenga-Etego LN, Amuzu DSY, Avaro M, Awandare GA, Ayivor-Djanie R, Bashton M, Batty EM, Bediako Y, De Belder D, Benedetti E, Bergthaler A, Boers SA, Campos J, Carr RAA, Cuba F, Dattero ME, Dejnirattisai W, Dilthey A, Duedu KO, Endler L, Engelmann I, Francisco NM, Fuchs J, Gnimpieba EZ, Groc S, Gyamfi J, Heemskerk D, Houwaart T, Hsiao NY, Huska M, Hölzer M, Iranzadeh A, Jarva H, Jeewandara C, Jolly B, Joseph R, Kant R, Ki KKK, Kurkela S, Lappalainen M, Lataretu M, Liu C, Malavige GN, Mashe T, Mongkolsapaya J, Montes B, Molina Mora JA, Morang'a CM, Mvula B, Nagarajan N, Nelson A, Ngoi JM, da Paixão JP, Panning M, Poklepovich T, Quashie PK, Ranasinghe D, Russo M, San JE, Sanderson ND, Scaria V, Screaton G, Sironen T, Sisay A, Smith D, Smura T, Supasa P, Suphavilai C, Swann J, Tegally H, Tegomoh B, Vapalahti O, Walker A, Wilkinson RJ, Williamson C; IMSSC2 Laboratory Network Consortium; de Oliveira T, Peto TE, Crook D, Corbett-Detig R, Iqbal Z. Hunt M, et al. Among authors: sironen t. bioRxiv [Preprint]. 2024 Apr 30:2024.04.29.591666. doi: 10.1101/2024.04.29.591666. bioRxiv. 2024. PMID: 38746185 Free PMC article. Preprint.
Evolution and genetic characterization of Seoul virus in wild rats Rattus norvegicus from an urban park in Lyon, France 2020-2022.
Alburkat H, Smura T, Bouilloud M, Pradel J, Anfray G, Berthier K, Dutra L, Loiseau A, Niamsap T, Olander V, Sepulveda D, Venkat V, Charbonnel N, Castel G, Sironen T. Alburkat H, et al. Among authors: sironen t. PLoS Negl Trop Dis. 2024 May 13;18(5):e0012142. doi: 10.1371/journal.pntd.0012142. Online ahead of print. PLoS Negl Trop Dis. 2024. PMID: 38739651 Free article.
Hibernating vesper bats are a weak source for biomonitoring of coronaviruses.
Goll A, Dutra L, Nowicka J, Sgarabotto E, Venkat V, Apoznański G, Kokurewicz T, Rachwald A, Rabalski L, Alburkat H, Virtanen J, Sironen T, Kant R, Bourret V, Grzybek M. Goll A, et al. Among authors: sironen t. One Health. 2024 Apr 23;18:100733. doi: 10.1016/j.onehlt.2024.100733. eCollection 2024 Jun. One Health. 2024. PMID: 38694618 Free PMC article.
Phylogenetic Characterization of Orthohantavirus dobravaense (Dobrava Virus).
Erdin M, Polat C, Smura T, Irmak S, Cetintas O, Cogal M, Colak F, Karatas A, Sozen M, Matur F, Vapalahti O, Sironen T, Oktem IMA. Erdin M, et al. Among authors: sironen t. Emerg Infect Dis. 2024 Apr;30(4):779-782. doi: 10.3201/eid3004.230912. Emerg Infect Dis. 2024. PMID: 38526228 Free PMC article.
Double-blinded, randomised, placebo-controlled trial of convalescent plasma for COVID-19: analyses by neutralising antibodies homologous to recipients' variants.
Khawaja T, Kajova M, Levonen I, Pietilä JP, Välimaa H, Paajanen J, Pakkanen SH, Patjas A, Montonen R, Miettinen S, Virtanen J, Smura T, Sironen T, Fagerlund R, Ugurlu H, Iheozor-Ejiofor R, Saksela K, Vahlberg T, Ranki A, Vierikko A, Ihalainen J, Vapalahti O, Kantele A. Khawaja T, et al. Among authors: sironen t. Infect Dis (Lond). 2024 Jun;56(6):423-433. doi: 10.1080/23744235.2024.2329957. Epub 2024 Mar 21. Infect Dis (Lond). 2024. PMID: 38513074
Nanobody engineering for SARS-CoV-2 neutralization and detection.
Hannula L, Kuivanen S, Lasham J, Kant R, Kareinen L, Bogacheva M, Strandin T, Sironen T, Hepojoki J, Sharma V, Saviranta P, Kipar A, Vapalahti O, Huiskonen JT, Rissanen I. Hannula L, et al. Among authors: sironen t. Microbiol Spectr. 2024 Apr 2;12(4):e0419922. doi: 10.1128/spectrum.04199-22. Epub 2024 Feb 16. Microbiol Spectr. 2024. PMID: 38363137 Free PMC article.
162 results