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AlphaFind: discover structure similarity across the proteome in AlphaFold DB.
Nucleic Acids Res. 2024 May 15:gkae397. doi: 10.1093/nar/gkae397. Online ahead of print.
Nucleic Acids Res. 2024.
PMID: 38747341
Analysis of chimeric reads characterises the diverse targetome of AGO2-mediated regulation.
Hejret V, Varadarajan NM, Klimentova E, Gresova K, Giassa IC, Vanacova S, Alexiou P.
Hejret V, et al. Among authors: gresova k.
Sci Rep. 2023 Dec 21;13(1):22895. doi: 10.1038/s41598-023-49757-z.
Sci Rep. 2023.
PMID: 38129478
Free PMC article.
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Transfer Learning Allows Accurate RBP Target Site Prediction with Limited Sample Sizes.
Vaculík O, Chalupová E, Grešová K, Majtner T, Alexiou P.
Vaculík O, et al. Among authors: gresova k.
Biology (Basel). 2023 Sep 25;12(10):1276. doi: 10.3390/biology12101276.
Biology (Basel). 2023.
PMID: 37886986
Free PMC article.
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Genomic benchmarks: a collection of datasets for genomic sequence classification.
Grešová K, Martinek V, Čechák D, Šimeček P, Alexiou P.
Grešová K, et al.
BMC Genom Data. 2023 May 1;24(1):25. doi: 10.1186/s12863-023-01123-8.
BMC Genom Data. 2023.
PMID: 37127596
Free PMC article.
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Using Attribution Sequence Alignment to Interpret Deep Learning Models for miRNA Binding Site Prediction.
Grešová K, Vaculík O, Alexiou P.
Grešová K, et al.
Biology (Basel). 2023 Feb 26;12(3):369. doi: 10.3390/biology12030369.
Biology (Basel). 2023.
PMID: 36979061
Free PMC article.
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miRBind: A Deep Learning Method for miRNA Binding Classification.
Klimentová E, Hejret V, Krčmář J, Grešová K, Giassa IC, Alexiou P.
Klimentová E, et al. Among authors: gresova k.
Genes (Basel). 2022 Dec 9;13(12):2323. doi: 10.3390/genes13122323.
Genes (Basel). 2022.
PMID: 36553590
Free PMC article.
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Small RNA Targets: Advances in Prediction Tools and High-Throughput Profiling.
Grešová K, Alexiou P, Giassa IC.
Grešová K, et al.
Biology (Basel). 2022 Dec 11;11(12):1798. doi: 10.3390/biology11121798.
Biology (Basel). 2022.
PMID: 36552307
Free PMC article.
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