Penel S - Search Results

1

PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets.

Comte A, Tricou T, Tannier E, Joseph J, Siberchicot A, Penel S, Allio R, Delsuc F, Dray S, de Vienne DM. Comte A, et al. Among authors: penel s. Mol Biol Evol. 2023 Nov 3;40(11):msad234. doi: 10.1093/molbev/msad234. Mol Biol Evol. 2023. PMID: 37879113 Free PMC article.

2

tidy tree: A New Layout for Phylogenetic Trees.

Penel S, de Vienne DM. Penel S, et al. Mol Biol Evol. 2022 Oct 7;39(10):msac204. doi: 10.1093/molbev/msac204. Mol Biol Evol. 2022. PMID: 36161327 Free PMC article.

3

RiboDB Database: A Comprehensive Resource for Prokaryotic Systematics.

Jauffrit F, Penel S, Delmotte S, Rey C, de Vienne DM, Gouy M, Charrier JP, Flandrois JP, Brochier-Armanet C. Jauffrit F, et al. Among authors: penel s. Mol Biol Evol. 2016 Aug;33(8):2170-2. doi: 10.1093/molbev/msw088. Epub 2016 May 5. Mol Biol Evol. 2016. PMID: 27189556

4

Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation.

Penel S, Menet H, Tricou T, Daubin V, Tannier E. Penel S, et al. Bioinformatics. 2022 Apr 12;38(8):2350-2352. doi: 10.1093/bioinformatics/btac062. Bioinformatics. 2022. PMID: 35139153

5

Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.

Comte N, Morel B, Hasić D, Guéguen L, Boussau B, Daubin V, Penel S, Scornavacca C, Gouy M, Stamatakis A, Tannier E, Parsons DP. Comte N, et al. Among authors: penel s. Bioinformatics. 2020 Sep 15;36(18):4822-4824. doi: 10.1093/bioinformatics/btaa615. Bioinformatics. 2020. PMID: 33085745

6

No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes.

Francois CM, Duret L, Simon L, Mermillod-Blondin F, Malard F, Konecny-Dupré L, Planel R, Penel S, Douady CJ, Lefébure T. Francois CM, et al. Among authors: penel s. Mol Biol Evol. 2016 Oct;33(10):2605-20. doi: 10.1093/molbev/msw131. Epub 2016 Jul 8. Mol Biol Evol. 2016. PMID: 27401232

7

Evolutionary Plasticity of Mating-Type Determination Mechanisms in Paramecium aurelia Sibling Species.

Sawka-Gądek N, Potekhin A, Singh DP, Grevtseva I, Arnaiz O, Penel S, Sperling L, Tarcz S, Duret L, Nekrasova I, Meyer E. Sawka-Gądek N, et al. Among authors: penel s. Genome Biol Evol. 2021 Feb 3;13(2):evaa258. doi: 10.1093/gbe/evaa258. Genome Biol Evol. 2021. PMID: 33313646 Free PMC article.

8

Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium.

Lassalle F, Planel R, Penel S, Chapulliot D, Barbe V, Dubost A, Calteau A, Vallenet D, Mornico D, Bigot T, Guéguen L, Vial L, Muller D, Daubin V, Nesme X. Lassalle F, et al. Among authors: penel s. Genome Biol Evol. 2017 Dec 1;9(12):3413-3431. doi: 10.1093/gbe/evx255. Genome Biol Evol. 2017. PMID: 29220487 Free PMC article.

9

High-quality sequence clustering guided by network topology and multiple alignment likelihood.

Miele V, Penel S, Daubin V, Picard F, Kahn D, Duret L. Miele V, et al. Among authors: penel s. Bioinformatics. 2012 Apr 15;28(8):1078-85. doi: 10.1093/bioinformatics/bts098. Epub 2012 Feb 25. Bioinformatics. 2012. PMID: 22368255

10

Databases of homologous gene families for comparative genomics.

Penel S, Arigon AM, Dufayard JF, Sertier AS, Daubin V, Duret L, Gouy M, Perrière G. Penel S, et al. BMC Bioinformatics. 2009 Jun 16;10 Suppl 6(Suppl 6):S3. doi: 10.1186/1471-2105-10-S6-S3. BMC Bioinformatics. 2009. PMID: 19534752 Free PMC article.

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