Abraham PE - Search Results

1

A glimpse into the fungal metabolomic abyss: Novel network analysis reveals relationships between exogenous compounds and their outputs.

Gopalakrishnan Meena M, Lane MJ, Tannous J, Carrell AA, Abraham PE, Giannone RJ, Ané JM, Keller NP, Labbé JL, Geiger AG, Kainer D, Jacobson DA, Rush TA. Gopalakrishnan Meena M, et al. Among authors: abraham pe. PNAS Nexus. 2023 Sep 29;2(10):pgad322. doi: 10.1093/pnasnexus/pgad322. eCollection 2023 Oct. PNAS Nexus. 2023. PMID: 37854706 Free PMC article.

2

Defining the boundaries and characterizing the landscape of functional genome expression in vascular tissues of Populus using shotgun proteomics.

Abraham P, Adams R, Giannone RJ, Kalluri U, Ranjan P, Erickson B, Shah M, Tuskan GA, Hettich RL. Abraham P, et al. J Proteome Res. 2012 Jan 1;11(1):449-60. doi: 10.1021/pr200851y. Epub 2011 Nov 9. J Proteome Res. 2012. PMID: 22003893

3

Putting the pieces together: high-performance LC-MS/MS provides network-, pathway-, and protein-level perspectives in Populus.

Abraham P, Giannone RJ, Adams RM, Kalluri U, Tuskan GA, Hettich RL. Abraham P, et al. Mol Cell Proteomics. 2013 Jan;12(1):106-19. doi: 10.1074/mcp.M112.022996. Epub 2012 Oct 16. Mol Cell Proteomics. 2013. PMID: 23073815 Free PMC article.

4

Metaproteomics: extracting and mining proteome information to characterize metabolic activities in microbial communities.

Abraham PE, Giannone RJ, Xiong W, Hettich RL. Abraham PE, et al. Curr Protoc Bioinformatics. 2014 Jun 17;46:13.26.1-13.26.14. doi: 10.1002/0471250953.bi1326s46. Curr Protoc Bioinformatics. 2014. PMID: 24939130

5

Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis.

Wippler J, Kleiner M, Lott C, Gruhl A, Abraham PE, Giannone RJ, Young JC, Hettich RL, Dubilier N. Wippler J, et al. Among authors: abraham pe. BMC Genomics. 2016 Nov 21;17(1):942. doi: 10.1186/s12864-016-3293-y. BMC Genomics. 2016. PMID: 27871231 Free PMC article.

6

Quantitative proteome profile of water deficit stress responses in eastern cottonwood (Populus deltoides) leaves.

Abraham PE, Garcia BJ, Gunter LE, Jawdy SS, Engle N, Yang X, Jacobson DA, Hettich RL, Tuskan GA, Tschaplinski TJ. Abraham PE, et al. PLoS One. 2018 Feb 15;13(2):e0190019. doi: 10.1371/journal.pone.0190019. eCollection 2018. PLoS One. 2018. PMID: 29447168 Free PMC article.

7

Evaluation of an untargeted nano-liquid chromatography-mass spectrometry approach to expand coverage of low molecular weight dissolved organic matter in Arctic soil.

Ladd MP, Giannone RJ, Abraham PE, Wullschleger SD, Hettich RL. Ladd MP, et al. Among authors: abraham pe. Sci Rep. 2019 Apr 9;9(1):5810. doi: 10.1038/s41598-019-42118-9. Sci Rep. 2019. PMID: 30967565 Free PMC article.

8

Scavenging organic nitrogen and remodelling lipid metabolism are key survival strategies adopted by the endophytic fungi, Serendipita vermifera and Serendipita bescii to alleviate nitrogen and phosphorous starvation in vitro.

Ray P, Abraham PE, Guo Y, Giannone RJ, Engle NL, Yang ZK, Jacobson D, Hettich RL, Tschaplinski TJ, Craven KD. Ray P, et al. Among authors: abraham pe. Environ Microbiol Rep. 2019 Aug;11(4):548-557. doi: 10.1111/1758-2229.12757. Epub 2019 May 1. Environ Microbiol Rep. 2019. PMID: 30970176 Free PMC article.

9

Exploiting the Dynamic Relationship between Peptide Separation Quality and Peptide Coisolation in a Multiple-Peptide Matches-per-Spectrum Approach Offers a Strategy To Optimize Bottom-Up Proteomics Throughput and Depth.

Villalobos Solis MI, Giannone RJ, Hettich RL, Abraham PE. Villalobos Solis MI, et al. Among authors: abraham pe. Anal Chem. 2019 Jun 4;91(11):7273-7279. doi: 10.1021/acs.analchem.9b00819. Epub 2019 May 22. Anal Chem. 2019. PMID: 31075198

10

Metabolism of syringyl lignin-derived compounds in Pseudomonas putida enables convergent production of 2-pyrone-4,6-dicarboxylic acid.

Notonier S, Werner AZ, Kuatsjah E, Dumalo L, Abraham PE, Hatmaker EA, Hoyt CB, Amore A, Ramirez KJ, Woodworth SP, Klingeman DM, Giannone RJ, Guss AM, Hettich RL, Eltis LD, Johnson CW, Beckham GT. Notonier S, et al. Among authors: abraham pe. Metab Eng. 2021 May;65:111-122. doi: 10.1016/j.ymben.2021.02.005. Epub 2021 Mar 16. Metab Eng. 2021. PMID: 33741529

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