Aihara K - Search Results

1

STAMarker: determining spatial domain-specific variable genes with saliency maps in deep learning.

Zhang C, Dong K, Aihara K, Chen L, Zhang S. Zhang C, et al. Among authors: aihara k. Nucleic Acids Res. 2023 Nov 10;51(20):e103. doi: 10.1093/nar/gkad801. Nucleic Acids Res. 2023. PMID: 37811885 Free PMC article.

2

Personalized characterization of diseases using sample-specific networks.

Liu X, Wang Y, Ji H, Aihara K, Chen L. Liu X, et al. Among authors: aihara k. Nucleic Acids Res. 2016 Dec 15;44(22):e164. doi: 10.1093/nar/gkw772. Epub 2016 Sep 4. Nucleic Acids Res. 2016. PMID: 27596597 Free PMC article.

3

Earthquake alerting based on spatial geodetic data by spatiotemporal information transformation learning.

Tong Y, Hong R, Zhang Z, Aihara K, Chen P, Liu R, Chen L. Tong Y, et al. Among authors: aihara k. Proc Natl Acad Sci U S A. 2023 Sep 12;120(37):e2302275120. doi: 10.1073/pnas.2302275120. Epub 2023 Sep 5. Proc Natl Acad Sci U S A. 2023. PMID: 37669376 Free PMC article.

4

Uncovering signal transduction networks from high-throughput data by integer linear programming.

Zhao XM, Wang RS, Chen L, Aihara K. Zhao XM, et al. Among authors: aihara k. Nucleic Acids Res. 2008 May;36(9):e48. doi: 10.1093/nar/gkn145. Epub 2008 Apr 13. Nucleic Acids Res. 2008. PMID: 18411207 Free PMC article.

5

Autoreservoir computing for multistep ahead prediction based on the spatiotemporal information transformation.

Chen P, Liu R, Aihara K, Chen L. Chen P, et al. Among authors: aihara k. Nat Commun. 2020 Sep 11;11(1):4568. doi: 10.1038/s41467-020-18381-0. Nat Commun. 2020. PMID: 32917894 Free PMC article.

6

Collective fluctuation implies imminent state transition: Comment on "Dynamic and thermodynamic models of adaptation" by A.N. Gorban et al.

Liu R, Aihara K, Chen L. Liu R, et al. Among authors: aihara k. Phys Life Rev. 2021 Jul;37:103-107. doi: 10.1016/j.plrev.2021.04.002. Epub 2021 Apr 19. Phys Life Rev. 2021. PMID: 33887574 No abstract available.

7

Dynamics-based data science in biology.

Shi J, Aihara K, Chen L. Shi J, et al. Among authors: aihara k. Natl Sci Rev. 2021 Feb 12;8(5):nwab029. doi: 10.1093/nsr/nwab029. eCollection 2021 May. Natl Sci Rev. 2021. PMID: 34691649 Free PMC article.

8

Embedding entropy: a nonlinear measure of dynamical causality.

Shi J, Chen L, Aihara K. Shi J, et al. Among authors: aihara k. J R Soc Interface. 2022 Mar;19(188):20210766. doi: 10.1098/rsif.2021.0766. Epub 2022 Mar 30. J R Soc Interface. 2022. PMID: 35350881 Free PMC article.

9

Protein function prediction with high-throughput data.

Zhao XM, Chen L, Aihara K. Zhao XM, et al. Among authors: aihara k. Amino Acids. 2008 Oct;35(3):517-30. doi: 10.1007/s00726-008-0077-y. Epub 2008 Apr 22. Amino Acids. 2008. PMID: 18427717 Review.

10

Protein function prediction with the shortest path in functional linkage graph and boosting.

Zhao XM, Chen L, Aihara K. Zhao XM, et al. Among authors: aihara k. Int J Bioinform Res Appl. 2008;4(4):375-84. doi: 10.1504/IJBRA.2008.021175. Int J Bioinform Res Appl. 2008. PMID: 19008182

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