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Gene regulatory Networks Reveal Sex Difference in Lung Adenocarcinoma.
Saha E, Guebila MB, Fanfani V, Fischer J, Shutta KH, Mandros P, DeMeo DL, Quackenbush J, Lopes-Ramos CM. Saha E, et al. Among authors: lopes ramos cm. bioRxiv [Preprint]. 2023 Sep 24:2023.09.22.559001. doi: 10.1101/2023.09.22.559001. bioRxiv. 2023. PMID: 37790409 Free PMC article. Preprint.
The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks.
Ben Guebila M, Wang T, Lopes-Ramos CM, Fanfani V, Weighill D, Burkholz R, Schlauch D, Paulson JN, Altenbuchinger M, Shutta KH, Sonawane AR, Lim J, Calderer G, van IJzendoorn DGP, Morgan D, Marin A, Chen CY, Song Q, Saha E, DeMeo DL, Padi M, Platig J, Kuijjer ML, Glass K, Quackenbush J. Ben Guebila M, et al. Among authors: lopes ramos cm. Genome Biol. 2023 Mar 9;24(1):45. doi: 10.1186/s13059-023-02877-1. Genome Biol. 2023. PMID: 36894939 Free PMC article.
An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks.
Ben Guebila M, Weighill D, Lopes-Ramos CM, Burkholz R, Pop RT, Palepu K, Shapoval M, Fagny M, Schlauch D, Glass K, Altenbuchinger M, Kuijjer ML, Platig J, Quackenbush J. Ben Guebila M, et al. Among authors: lopes ramos cm. Nat Methods. 2022 May;19(5):511-513. doi: 10.1038/s41592-022-01479-2. Nat Methods. 2022. PMID: 35459940 Free PMC article. No abstract available.
GRAND: a database of gene regulatory network models across human conditions.
Ben Guebila M, Lopes-Ramos CM, Weighill D, Sonawane AR, Burkholz R, Shamsaei B, Platig J, Glass K, Kuijjer ML, Quackenbush J. Ben Guebila M, et al. Among authors: lopes ramos cm. Nucleic Acids Res. 2022 Jan 7;50(D1):D610-D621. doi: 10.1093/nar/gkab778. Nucleic Acids Res. 2022. PMID: 34508353 Free PMC article.
Genome-Wide Sex and Gender Differences in Cancer.
Lopes-Ramos CM, Quackenbush J, DeMeo DL. Lopes-Ramos CM, et al. Front Oncol. 2020 Nov 23;10:597788. doi: 10.3389/fonc.2020.597788. eCollection 2020. Front Oncol. 2020. PMID: 33330090 Free PMC article. Review.
Proceedings of the fourth international molecular pathological epidemiology (MPE) meeting.
Campbell PT, Ambrosone CB, Nishihara R, Aerts HJWL, Bondy M, Chatterjee N, Garcia-Closas M, Giannakis M, Golden JA, Heng YJ, Kip NS, Koshiol J, Liu XS, Lopes-Ramos CM, Mucci LA, Nowak JA, Phipps AI, Quackenbush J, Schoen RE, Sholl LM, Tamimi RM, Wang M, Weijenberg MP, Wu CJ, Wu K, Yao S, Yu KH, Zhang X, Rebbeck TR, Ogino S. Campbell PT, et al. Among authors: lopes ramos cm. Cancer Causes Control. 2019 Aug;30(8):799-811. doi: 10.1007/s10552-019-01177-z. Epub 2019 May 8. Cancer Causes Control. 2019. PMID: 31069578 Free PMC article.
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