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The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes.
Anim Microbiome. 2023 Oct 5;5(1):48. doi: 10.1186/s42523-023-00267-3.
Anim Microbiome. 2023.
PMID: 37798675
Free PMC article.
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes.
Kasmanas JC, Bartholomäus A, Corrêa FB, Tal T, Jehmlich N, Herberth G, von Bergen M, Stadler PF, Carvalho ACPLF, Nunes da Rocha U.
Kasmanas JC, et al.
Nucleic Acids Res. 2021 Jan 8;49(D1):D743-D750. doi: 10.1093/nar/gkaa1031.
Nucleic Acids Res. 2021.
PMID: 33221926
Free PMC article.
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Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture.
Liu B, Sträuber H, Saraiva J, Harms H, Silva SG, Kasmanas JC, Kleinsteuber S, Nunes da Rocha U.
Liu B, et al. Among authors: kasmanas jc.
Microbiome. 2022 Mar 25;10(1):48. doi: 10.1186/s40168-021-01219-2.
Microbiome. 2022.
PMID: 35331330
Free PMC article.
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Corrigendum: The fate of sulfonamide resistance genes and anthropogenic pollution marker intI1 after discharge of wastewater into a pristine river stream.
Haenelt S, Wang G, Kasmanas JC, Musat F, Richnow HH, da Rocha UN, Müller JA, Musat N.
Haenelt S, et al. Among authors: kasmanas jc.
Front Microbiol. 2023 May 30;14:1208555. doi: 10.3389/fmicb.2023.1208555. eCollection 2023.
Front Microbiol. 2023.
PMID: 37323889
Free PMC article.
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The fate of sulfonamide resistance genes and anthropogenic pollution marker intI1 after discharge of wastewater into a pristine river stream.
Haenelt S, Wang G, Kasmanas JC, Musat F, Richnow HH, da Rocha UN, Müller JA, Musat N.
Haenelt S, et al. Among authors: kasmanas jc.
Front Microbiol. 2023 Jan 25;14:1058350. doi: 10.3389/fmicb.2023.1058350. eCollection 2023.
Front Microbiol. 2023.
PMID: 36760511
Free PMC article.
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