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Gene regulatory Networks Reveal Sex Difference in Lung Adenocarcinoma.
Saha E, Guebila MB, Fanfani V, Fischer J, Shutta KH, Mandros P, DeMeo DL, Quackenbush J, Lopes-Ramos CM. Saha E, et al. Among authors: quackenbush j. bioRxiv [Preprint]. 2023 Sep 24:2023.09.22.559001. doi: 10.1101/2023.09.22.559001. bioRxiv. 2023. PMID: 37790409 Free PMC article. Preprint.
Sexually-dimorphic targeting of functionally-related genes in COPD.
Glass K, Quackenbush J, Silverman EK, Celli B, Rennard SI, Yuan GC, DeMeo DL. Glass K, et al. Among authors: quackenbush j. BMC Syst Biol. 2014 Nov 28;8:118. doi: 10.1186/s12918-014-0118-y. BMC Syst Biol. 2014. PMID: 25431000 Free PMC article.
Mitochondrial iron chelation ameliorates cigarette smoke-induced bronchitis and emphysema in mice.
Cloonan SM, Glass K, Laucho-Contreras ME, Bhashyam AR, Cervo M, Pabón MA, Konrad C, Polverino F, Siempos II, Perez E, Mizumura K, Ghosh MC, Parameswaran H, Williams NC, Rooney KT, Chen ZH, Goldklang MP, Yuan GC, Moore SC, Demeo DL, Rouault TA, D'Armiento JM, Schon EA, Manfredi G, Quackenbush J, Mahmood A, Silverman EK, Owen CA, Choi AM. Cloonan SM, et al. Among authors: quackenbush j. Nat Med. 2016 Feb;22(2):163-74. doi: 10.1038/nm.4021. Epub 2016 Jan 11. Nat Med. 2016. PMID: 26752519 Free PMC article.
DNA methylation profiling in human lung tissue identifies genes associated with COPD.
Morrow JD, Cho MH, Hersh CP, Pinto-Plata V, Celli B, Marchetti N, Criner G, Bueno R, Washko G, Glass K, Choi AMK, Quackenbush J, Silverman EK, DeMeo DL. Morrow JD, et al. Among authors: quackenbush j. Epigenetics. 2016 Oct 2;11(10):730-739. doi: 10.1080/15592294.2016.1226451. Epub 2016 Nov 1. Epigenetics. 2016. PMID: 27564456 Free PMC article.
Bipartite Community Structure of eQTLs.
Platig J, Castaldi PJ, DeMeo D, Quackenbush J. Platig J, et al. Among authors: quackenbush j. PLoS Comput Biol. 2016 Sep 12;12(9):e1005033. doi: 10.1371/journal.pcbi.1005033. eCollection 2016 Sep. PLoS Comput Biol. 2016. PMID: 27618581 Free PMC article.
Functional interactors of three genome-wide association study genes are differentially expressed in severe chronic obstructive pulmonary disease lung tissue.
Morrow JD, Zhou X, Lao T, Jiang Z, DeMeo DL, Cho MH, Qiu W, Cloonan S, Pinto-Plata V, Celli B, Marchetti N, Criner GJ, Bueno R, Washko GR, Glass K, Quackenbush J, Choi AM, Silverman EK, Hersh CP. Morrow JD, et al. Among authors: quackenbush j. Sci Rep. 2017 Mar 13;7:44232. doi: 10.1038/srep44232. Sci Rep. 2017. PMID: 28287180 Free PMC article. Clinical Trial.
Exploring regulation in tissues with eQTL networks.
Fagny M, Paulson JN, Kuijjer ML, Sonawane AR, Chen CY, Lopes-Ramos CM, Glass K, Quackenbush J, Platig J. Fagny M, et al. Among authors: quackenbush j. Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):E7841-E7850. doi: 10.1073/pnas.1707375114. Epub 2017 Aug 29. Proc Natl Acad Sci U S A. 2017. PMID: 28851834 Free PMC article.
Regulatory network changes between cell lines and their tissues of origin.
Lopes-Ramos CM, Paulson JN, Chen CY, Kuijjer ML, Fagny M, Platig J, Sonawane AR, DeMeo DL, Quackenbush J, Glass K. Lopes-Ramos CM, et al. Among authors: quackenbush j. BMC Genomics. 2017 Sep 12;18(1):723. doi: 10.1186/s12864-017-4111-x. BMC Genomics. 2017. PMID: 28899340 Free PMC article.
Understanding Tissue-Specific Gene Regulation.
Sonawane AR, Platig J, Fagny M, Chen CY, Paulson JN, Lopes-Ramos CM, DeMeo DL, Quackenbush J, Glass K, Kuijjer ML. Sonawane AR, et al. Among authors: quackenbush j. Cell Rep. 2017 Oct 24;21(4):1077-1088. doi: 10.1016/j.celrep.2017.10.001. Cell Rep. 2017. PMID: 29069589 Free PMC article.
355 results