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Leveraging shared ancestral variation to detect local introgression.
Lopez Fang L, Peede D, Ortega-Del Vecchyo D, McTavish EJ, Huerta-Sánchez E. Lopez Fang L, et al. Among authors: peede d. PLoS Genet. 2024 Jan 8;20(1):e1010155. doi: 10.1371/journal.pgen.1010155. eCollection 2024 Jan. PLoS Genet. 2024. PMID: 38190420 Free PMC article.
The MUC19 gene in Denisovans, Neanderthals, and Modern Humans: An Evolutionary History of Recurrent Introgression and Natural Selection.
Villanea FA, Peede D, Kaufman EJ, Añorve-Garibay V, Witt KE, Villa-Islas V, Zeloni R, Marnetto D, Moorjani P, Jay F, Valdmanis PN, Ávila-Arcos MC, Huerta-Sánchez E. Villanea FA, et al. Among authors: peede d. bioRxiv [Preprint]. 2023 Sep 25:2023.09.25.559202. doi: 10.1101/2023.09.25.559202. bioRxiv. 2023. PMID: 37808839 Free PMC article. Preprint.
Ancient Mongolian aurochs genomes reveal sustained introgression and management in East Asia.
Brunson K, Witt KE, Monge S, Williams S, Peede D, Odsuren D, Bukhchuluun D, Cameron A, Szpak P, Amartuvshin C, Honeychurch W, Wright J, Pleuger S, Erdene M, Tumen D, Rogers L, Khatanbaatar D, Batdalai B, Galdan G, Janz L. Brunson K, et al. Among authors: peede d. bioRxiv [Preprint]. 2023 Aug 10:2023.08.10.552443. doi: 10.1101/2023.08.10.552443. bioRxiv. 2023. PMID: 37609302 Free PMC article. Preprint.
Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations.
Lauterbur ME, Cavassim MIA, Gladstein AL, Gower G, Pope NS, Tsambos G, Adrion J, Belsare S, Biddanda A, Caudill V, Cury J, Echevarria I, Haller BC, Hasan AR, Huang X, Iasi LNM, Noskova E, Obsteter J, Pavinato VAC, Pearson A, Peede D, Perez MF, Rodrigues MF, Smith CCR, Spence JP, Teterina A, Tittes S, Unneberg P, Vazquez JM, Waples RK, Wohns AW, Wong Y, Baumdicker F, Cartwright RA, Gorjanc G, Gutenkunst RN, Kelleher J, Kern AD, Ragsdale AP, Ralph PL, Schrider DR, Gronau I. Lauterbur ME, et al. Among authors: peede d. Elife. 2023 Jun 21;12:RP84874. doi: 10.7554/eLife.84874. Elife. 2023. PMID: 37342968 Free PMC article.
Correction: Highly contiguous assemblies of 101 drosophilid genomes.
Kim BY, Wang JR, Miller DE, Barmina O, Delaney E, Thompson A, Comeault AA, Peede D, D'Agostino ERR, Pelaez J, Aguilar JM, Haji D, Matsunaga T, Armstrong E, Zych M, Ogawa Y, Stamenković-Radak M, Jelić M, Veselinović MS, Tanasković M, Erić P, Gao JJ, Katoh TK, Toda MJ, Watabe H, Watada M, Davis JS, Moyle LC, Manoli G, Bertolini E, Košťál V, Hawley RS, Takahashi A, Jones CD, Price DK, Whiteman N, Kopp A, Matute DR, Petrov DA. Kim BY, et al. Among authors: peede d. Elife. 2022 Mar 18;11:e78579. doi: 10.7554/eLife.78579. Elife. 2022. PMID: 35302486 Free PMC article.
Widespread introgression across a phylogeny of 155 Drosophila genomes.
Suvorov A, Kim BY, Wang J, Armstrong EE, Peede D, D'Agostino ERR, Price DK, Waddell P, Lang M, Courtier-Orgogozo V, David JR, Petrov D, Matute DR, Schrider DR, Comeault AA. Suvorov A, et al. Among authors: peede d. Curr Biol. 2022 Jan 10;32(1):111-123.e5. doi: 10.1016/j.cub.2021.10.052. Epub 2021 Nov 16. Curr Biol. 2022. PMID: 34788634 Free PMC article.
17 results