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BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring.
Sci Rep. 2023 Aug 18;13(1):13462. doi: 10.1038/s41598-023-40496-9.
Sci Rep. 2023.
PMID: 37596301
Free PMC article.
Reproducible growth of Brachypodium in EcoFAB 2.0 reveals that nitrogen form and starvation modulate root exudation.
Novak V, Andeer PF, Bowen BP, Ding Y, Zhalnina K, Hofmockel KS, Tomaka C, Harwood TV, van Winden MCM, Golini AN, Kosina SM, Northen TR.
Novak V, et al. Among authors: harwood tv.
Sci Adv. 2024 Jan 5;10(1):eadg7888. doi: 10.1126/sciadv.adg7888. Epub 2024 Jan 3.
Sci Adv. 2024.
PMID: 38170767
Free PMC article.
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plantMASST - Community-driven chemotaxonomic digitization of plants.
Gomes PWP, Mannochio-Russo H, Schmid R, Zuffa S, Damiani T, Quiros-Guerrero LM, Caraballo-Rodríguez AM, Zhao HN, Yang H, Xing S, Charron-Lamoureux V, Chigumba DN, Sedio BE, Myers JA, Allard PM, Harwood TV, Tamayo-Castillo G, Kang KB, Defossez E, Koolen HHF, da Silva MN, E Silva CYY, Rasmann S, Walker TWN, Glauser G, Chaves-Fallas JM, David B, Kim H, Lee KH, Kim MJ, Choi WJ, Keum YS, de Lima EJSP, de Medeiros LS, Bataglion GA, Costa EV, da Silva FMA, Carvalho ARV, Reis JDE, Pamplona S, Jeong E, Lee K, Kim GJ, Kil YS, Nam JW, Choi H, Han YK, Park SY, Lee KY, Hu C, Dong Y, Sang S, Morrison CR, Borges RM, Teixeira AM, Lee SY, Lee BS, Jeong SY, Kim KH, Rutz A, Gaudry A, Bruelhart E, Kappers IF, Karlova R, Meisenburg M, Berdaguer R, Tello JS, Henderson D, Cayola L, Wright SJ, Allen DN, Anderson-Teixeira KJ, Baltzer JL, Lutz JA, McMahon SM, Parker GG, Parker JD, Northen TR, Bowen BP, Pluskal T, van der Hooft JJJ, Carver JJ, Bandeira N, Pullman BS, Wolfender JL, Kersten RD, Wang M, Dorrestein PC.
Gomes PWP, et al. Among authors: harwood tv.
bioRxiv [Preprint]. 2024 May 14:2024.05.13.593988. doi: 10.1101/2024.05.13.593988.
bioRxiv. 2024.
PMID: 38798440
Free PMC article.
Preprint.
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Expression in poplar of dehydroshikimate dehydratase induces transcriptional and metabolic changes in the phenylpropanoid pathway.
Akyuz Turumtay E, Turumtay H, Tian Y, Lin CY, Ning Chai Y, Louie KB, Chen Y, Lipzen A, Harwood T, Satish Kumar K, Bowen BP, Wang Q, Mansfield SD, Blow MJ, Petzold CJ, Northen TR, Mortimer JC, Scheller HV, Eudes A.
Akyuz Turumtay E, et al.
J Exp Bot. 2024 May 29:erae251. doi: 10.1093/jxb/erae251. Online ahead of print.
J Exp Bot. 2024.
PMID: 38809816
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The primary transcriptome of hormogonia from a filamentous cyanobacterium defined by cappable-seq.
Harwood TV, Risser DD.
Harwood TV, et al.
Microbiology (Reading). 2021 Nov;167(11). doi: 10.1099/mic.0.001111.
Microbiology (Reading). 2021.
PMID: 34779764
Free article.
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The cyanobacterial taxis protein HmpF regulates type IV pilus activity in response to light.
Harwood TV, Zuniga EG, Kweon H, Risser DD.
Harwood TV, et al.
Proc Natl Acad Sci U S A. 2021 Mar 23;118(12):e2023988118. doi: 10.1073/pnas.2023988118.
Proc Natl Acad Sci U S A. 2021.
PMID: 33723073
Free PMC article.
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A Tripartite, Hierarchical Sigma Factor Cascade Promotes Hormogonium Development in the Filamentous Cyanobacterium Nostoc punctiforme.
Gonzalez A, Riley KW, Harwood TV, Zuniga EG, Risser DD.
Gonzalez A, et al. Among authors: harwood tv.
mSphere. 2019 May 1;4(3):e00231-19. doi: 10.1128/mSphere.00231-19.
mSphere. 2019.
PMID: 31043519
Free PMC article.
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Dynamic localization of HmpF regulates type IV pilus activity and directional motility in the filamentous cyanobacterium Nostoc punctiforme.
Cho YW, Gonzales A, Harwood TV, Huynh J, Hwang Y, Park JS, Trieu AQ, Italia P, Pallipuram VK, Risser DD.
Cho YW, et al. Among authors: harwood tv.
Mol Microbiol. 2017 Oct;106(2):252-265. doi: 10.1111/mmi.13761. Epub 2017 Aug 22.
Mol Microbiol. 2017.
PMID: 28779543
Free article.
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