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Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy.
Nat Biotechnol. 2024 Mar;42(3):367-370. doi: 10.1038/s41587-023-02100-3.
Nat Biotechnol. 2024.
PMID: 38278971
No abstract available.
Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy.
Larivière D, Abueg L, Brajuka N, Gallardo-Alba C, Grüning B, Ko BJ, Ostrovsky A, Palmada-Flores M, Pickett BD, Rabbani K, Balacco JR, Chaisson M, Cheng H, Collins J, Denisova A, Fedrigo O, Gallo GR, Giani AM, Gooder GM, Jain N, Johnson C, Kim H, Lee C, Marques-Bonet T, O'Toole B, Rhie A, Secomandi S, Sozzoni M, Tilley T, Uliano-Silva M, van den Beek M, Waterhouse RM, Phillippy AM, Jarvis ED, Schatz MC, Nekrutenko A, Formenti G.
Larivière D, et al. Among authors: gallardo alba c.
bioRxiv [Preprint]. 2023 Jun 30:2023.06.28.546576. doi: 10.1101/2023.06.28.546576.
bioRxiv. 2023.
PMID: 37425881
Free PMC article.
Updated.
Preprint.
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Galaxy Training: A powerful framework for teaching!
Hiltemann S, Rasche H, Gladman S, Hotz HR, Larivière D, Blankenberg D, Jagtap PD, Wollmann T, Bretaudeau A, Goué N, Griffin TJ, Royaux C, Le Bras Y, Mehta S, Syme A, Coppens F, Droesbeke B, Soranzo N, Bacon W, Psomopoulos F, Gallardo-Alba C, Davis J, Föll MC, Fahrner M, Doyle MA, Serrano-Solano B, Fouilloux AC, van Heusden P, Maier W, Clements D, Heyl F; Galaxy Training Network; Grüning B, Batut B.
Hiltemann S, et al. Among authors: gallardo alba c.
PLoS Comput Biol. 2023 Jan 9;19(1):e1010752. doi: 10.1371/journal.pcbi.1010752. eCollection 2023 Jan.
PLoS Comput Biol. 2023.
PMID: 36622853
Free PMC article.
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Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs.
Formenti G, Abueg L, Brajuka A, Brajuka N, Gallardo-Alba C, Giani A, Fedrigo O, Jarvis ED.
Formenti G, et al. Among authors: gallardo alba c.
Bioinformatics. 2022 Sep 2;38(17):4214-4216. doi: 10.1093/bioinformatics/btac460.
Bioinformatics. 2022.
PMID: 35799367
Free PMC article.
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Fostering accessible online education using Galaxy as an e-learning platform.
Serrano-Solano B, Föll MC, Gallardo-Alba C, Erxleben A, Rasche H, Hiltemann S, Fahrner M, Dunning MJ, Schulz MH, Scholtz B, Clements D, Nekrutenko A, Batut B, Grüning BA.
Serrano-Solano B, et al. Among authors: gallardo alba c.
PLoS Comput Biol. 2021 May 13;17(5):e1008923. doi: 10.1371/journal.pcbi.1008923. eCollection 2021 May.
PLoS Comput Biol. 2021.
PMID: 33983944
Free PMC article.
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A constructivist-based proposal for bioinformatics teaching practices during lockdown.
Gallardo-Alba C, Grüning B, Serrano-Solano B.
Gallardo-Alba C, et al.
PLoS Comput Biol. 2021 May 13;17(5):e1008922. doi: 10.1371/journal.pcbi.1008922. eCollection 2021 May.
PLoS Comput Biol. 2021.
PMID: 33983931
Free PMC article.
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