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ARCH: Large-scale Knowledge Graph via Aggregated Narrative Codified Health Records Analysis.
Gan Z, Zhou D, Rush E, Panickan VA, Ho YL, Ostrouchov G, Xu Z, Shen S, Xiong X, Greco KF, Hong C, Bonzel CL, Wen J, Costa L, Cai T, Begoli E, Xia Z, Gaziano JM, Liao KP, Cho K, Cai T, Lu J. Gan Z, et al. Among authors: lu j. medRxiv [Preprint]. 2023 May 21:2023.05.14.23289955. doi: 10.1101/2023.05.14.23289955. medRxiv. 2023. PMID: 37293026 Free PMC article. Preprint.
Clinical knowledge extraction via sparse embedding regression (KESER) with multi-center large scale electronic health record data.
Hong C, Rush E, Liu M, Zhou D, Sun J, Sonabend A, Castro VM, Schubert P, Panickan VA, Cai T, Costa L, He Z, Link N, Hauser R, Gaziano JM, Murphy SN, Ostrouchov G, Ho YL, Begoli E, Lu J, Cho K, Liao KP, Cai T; VA Million Veteran Program. Hong C, et al. Among authors: lu j. NPJ Digit Med. 2021 Oct 27;4(1):151. doi: 10.1038/s41746-021-00519-z. NPJ Digit Med. 2021. PMID: 34707226 Free PMC article.
Multiview Incomplete Knowledge Graph Integration with application to cross-institutional EHR data harmonization.
Zhou D, Gan Z, Shi X, Patwari A, Rush E, Bonzel CL, Panickan VA, Hong C, Ho YL, Cai T, Costa L, Li X, Castro VM, Murphy SN, Brat G, Weber G, Avillach P, Gaziano JM, Cho K, Liao KP, Lu J, Cai T. Zhou D, et al. Among authors: lu j. J Biomed Inform. 2022 Sep;133:104147. doi: 10.1016/j.jbi.2022.104147. Epub 2022 Jul 21. J Biomed Inform. 2022. PMID: 35872266 Free article.
Multimodal representation learning for predicting molecule-disease relations.
Wen J, Zhang X, Rush E, Panickan VA, Li X, Cai T, Zhou D, Ho YL, Costa L, Begoli E, Hong C, Gaziano JM, Cho K, Lu J, Liao KP, Zitnik M, Cai T. Wen J, et al. Among authors: lu j. Bioinformatics. 2023 Feb 3;39(2):btad085. doi: 10.1093/bioinformatics/btad085. Bioinformatics. 2023. PMID: 36805623 Free PMC article.
LATTE: Label-efficient incident phenotyping from longitudinal electronic health records.
Wen J, Hou J, Bonzel CL, Zhao Y, Castro VM, Gainer VS, Weisenfeld D, Cai T, Ho YL, Panickan VA, Costa L, Hong C, Gaziano JM, Liao KP, Lu J, Cho K, Cai T. Wen J, et al. Among authors: lu j. Patterns (N Y). 2023 Dec 27;5(1):100906. doi: 10.1016/j.patter.2023.100906. eCollection 2024 Jan 12. Patterns (N Y). 2023. PMID: 38264714 Free PMC article.
Progression of traction bronchiectasis/bronchiolectasis in interstitial lung abnormalities is associated with increased all-cause mortality: Age Gene/Environment Susceptibility-Reykjavik Study.
Hino T, Hida T, Nishino M, Lu J, Putman RK, Gudmundsson EF, Hata A, Araki T, Valtchinov VI, Honda O, Yanagawa M, Yamada Y, Kamitani T, Jinzaki M, Tomiyama N, Ishigami K, Honda H, San Jose Estepar R, Washko GR, Johkoh T, Christiani DC, Lynch DA, Gudnason V, Gudmundsson G, Hunninghake GM, Hatabu H. Hino T, et al. Among authors: lu j. Eur J Radiol Open. 2021 Mar 10;8:100334. doi: 10.1016/j.ejro.2021.100334. eCollection 2021. Eur J Radiol Open. 2021. PMID: 33748349 Free PMC article.
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