Zhang Y - Search Results

1

Author Correction: Brain Data Standards - A method for building data-driven cell-type ontologies.

Tan SZK, Kir H, Aevermann BD, Gillespie T, Harris N, Hawrylycz MJ, Jorstad NL, Lein ES, Matentzoglu N, Miller JA, Mollenkopf TS, Mungall CJ, Ray PL, Sanchez REA, Staats B, Vermillion J, Yadav A, Zhang Y, Scheuermann RH, Osumi-Sutherland D. Tan SZK, et al. Among authors: zhang y. Sci Data. 2023 Apr 28;10(1):246. doi: 10.1038/s41597-023-02165-4. Sci Data. 2023. PMID: 37117232 Free PMC article. No abstract available.

2

Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community.

Pickett BE, Greer DS, Zhang Y, Stewart L, Zhou L, Sun G, Gu Z, Kumar S, Zaremba S, Larsen CN, Jen W, Klem EB, Scheuermann RH. Pickett BE, et al. Among authors: zhang y. Viruses. 2012 Nov 19;4(11):3209-26. doi: 10.3390/v4113209. Viruses. 2012. PMID: 23202522 Free PMC article.

3

Influenza Research Database: An integrated bioinformatics resource for influenza virus research.

Zhang Y, Aevermann BD, Anderson TK, Burke DF, Dauphin G, Gu Z, He S, Kumar S, Larsen CN, Lee AJ, Li X, Macken C, Mahaffey C, Pickett BE, Reardon B, Smith T, Stewart L, Suloway C, Sun G, Tong L, Vincent AL, Walters B, Zaremba S, Zhao H, Zhou L, Zmasek C, Klem EB, Scheuermann RH. Zhang Y, et al. Nucleic Acids Res. 2017 Jan 4;45(D1):D466-D474. doi: 10.1093/nar/gkw857. Epub 2016 Sep 26. Nucleic Acids Res. 2017. PMID: 27679478 Free PMC article.

4

Genetic changes found in a distinct clade of Enterovirus D68 associated with paralysis during the 2014 outbreak.

Zhang Y, Cao J, Zhang S, Lee AJ, Sun G, Larsen CN, Zhao H, Gu Z, He S, Klem EB, Scheuermann RH. Zhang Y, et al. Among authors: zhang s. Virus Evol. 2016 Jun 15;2(1):vew015. doi: 10.1093/ve/vew015. eCollection 2016 Jan. Virus Evol. 2016. PMID: 28512577 Free PMC article.

5

Contemporary Circulating Enterovirus D68 Strains Have Acquired the Capacity for Viral Entry and Replication in Human Neuronal Cells.

Brown DM, Hixon AM, Oldfield LM, Zhang Y, Novotny M, Wang W, Das SR, Shabman RS, Tyler KL, Scheuermann RH. Brown DM, et al. Among authors: zhang y. mBio. 2018 Oct 16;9(5):e01954-18. doi: 10.1128/mBio.01954-18. mBio. 2018. PMID: 30327438 Free PMC article.

6

Hepatitis C Virus Database and Bioinformatics Analysis Tools in the Virus Pathogen Resource (ViPR).

Zhang Y, Zmasek C, Sun G, Larsen CN, Scheuermann RH. Zhang Y, et al. Methods Mol Biol. 2019;1911:47-69. doi: 10.1007/978-1-4939-8976-8_3. Methods Mol Biol. 2019. PMID: 30593617

7

A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2.

Grifoni A, Sidney J, Zhang Y, Scheuermann RH, Peters B, Sette A. Grifoni A, et al. Among authors: zhang y. Cell Host Microbe. 2020 Apr 8;27(4):671-680.e2. doi: 10.1016/j.chom.2020.03.002. Epub 2020 Mar 16. Cell Host Microbe. 2020. PMID: 32183941 Free PMC article.

8

Candidate Targets for Immune Responses to 2019-Novel Coronavirus (nCoV): Sequence Homology- and Bioinformatic-Based Predictions.

Grifoni A, Sidney J, Zhang Y, Scheuermann RH, Peters B, Sette A. Grifoni A, et al. Among authors: zhang y. SSRN [Preprint]. 2020 Feb 25:3541361. doi: 10.2139/ssrn.3541361. SSRN. 2020. PMID: 32714104 Free PMC article. Updated. Preprint.

9

FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman-Rafsky non-parametric test.

Zhang Y, Aevermann BD, Bakken TE, Miller JA, Hodge RD, Lein ES, Scheuermann RH. Zhang Y, et al. Brief Bioinform. 2021 Jul 20;22(4):bbaa339. doi: 10.1093/bib/bbaa339. Brief Bioinform. 2021. PMID: 33249453 Free PMC article.

10

Epidemiology and Sequence-Based Evolutionary Analysis of Circulating Non-Polio Enteroviruses.

Brown DM, Zhang Y, Scheuermann RH. Brown DM, et al. Among authors: zhang y. Microorganisms. 2020 Nov 25;8(12):1856. doi: 10.3390/microorganisms8121856. Microorganisms. 2020. PMID: 33255654 Free PMC article. Review.

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