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The Ontology of Biological Attributes (OBA)-computational traits for the life sciences.
Stefancsik R, Balhoff JP, Balk MA, Ball RL, Bello SM, Caron AR, Chesler EJ, de Souza V, Gehrke S, Haendel M, Harris LW, Harris NL, Ibrahim A, Koehler S, Matentzoglu N, McMurry JA, Mungall CJ, Munoz-Torres MC, Putman T, Robinson P, Smedley D, Sollis E, Thessen AE, Vasilevsky N, Walton DO, Osumi-Sutherland D. Stefancsik R, et al. Among authors: walton do. Mamm Genome. 2023 Sep;34(3):364-378. doi: 10.1007/s00335-023-09992-1. Epub 2023 Apr 19. Mamm Genome. 2023. PMID: 37076585 Free PMC article.
Mouse Phenome Database: towards a more FAIR-compliant and TRUST-worthy data repository and tool suite for phenotypes and genotypes.
Bogue MA, Ball RL, Philip VM, Walton DO, Dunn MH, Kolishovski G, Lamoureux A, Gerring M, Liang H, Emerson J, Stearns T, He H, Mukherjee G, Bluis J, Desai S, Sundberg B, Kadakkuzha B, Kunde-Ramamoorthy G, Chesler EJ. Bogue MA, et al. Among authors: walton do. Nucleic Acids Res. 2023 Jan 6;51(D1):D1067-D1074. doi: 10.1093/nar/gkac1007. Nucleic Acids Res. 2023. PMID: 36330959 Free PMC article.
The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences.
Stefancsik R, Balhoff JP, Balk MA, Ball R, Bello SM, Caron AR, Chessler E, de Souza V, Gehrke S, Haendel M, Harris LW, Harris NL, Ibrahim A, Koehler S, Matentzoglu N, McMurry JA, Mungall CJ, Munoz-Torres MC, Putman T, Robinson P, Smedley D, Sollis E, Thessen AE, Vasilevsky N, Walton DO, Osumi-Sutherland D. Stefancsik R, et al. Among authors: walton do. bioRxiv [Preprint]. 2023 Jan 27:2023.01.26.525742. doi: 10.1101/2023.01.26.525742. bioRxiv. 2023. PMID: 36747660 Free PMC article. Updated. Preprint.
Mouse phenome database: curated data repository with interactive multi-population and multi-trait analyses.
Bogue MA, Ball RL, Walton DO, Dunn MH, Kolishovski G, Berger A, Lamoureux A, Grubb SC, Gerring M, Kim M, Liang H, Emerson J, Stearns T, He H, Mukherjee G, Bluis J, Davis S, Desai S, Sundberg B, Kadakkuzha B, Kunde-Ramamoorthy G, Philip VM, Chesler EJ. Bogue MA, et al. Among authors: walton do. Mamm Genome. 2023 Dec;34(4):509-519. doi: 10.1007/s00335-023-10014-3. Epub 2023 Aug 15. Mamm Genome. 2023. PMID: 37581698 Free PMC article. Review.
GenomeMUSter mouse genetic variation service enables multitrait, multipopulation data integration and analysis.
Ball RL, Bogue MA, Liang H, Srivastava A, Ashbrook DG, Lamoureux A, Gerring MW, Hatoum AS, Kim MJ, He H, Emerson J, Berger AK, Walton DO, Sheppard K, El Kassaby B, Castellanos F, Kunde-Ramamoorthy G, Lu L, Bluis J, Desai S, Sundberg BA, Peltz G, Fang Z, Churchill GA, Williams RW, Agrawal A, Bult CJ, Philip VM, Chesler EJ. Ball RL, et al. Among authors: walton do. Genome Res. 2024 Feb 7;34(1):145-159. doi: 10.1101/gr.278157.123. Genome Res. 2024. PMID: 38290977 Free PMC article.
The Mouse Genome Database (MGD): from genes to mice--a community resource for mouse biology.
Eppig JT, Bult CJ, Kadin JA, Richardson JE, Blake JA, Anagnostopoulos A, Baldarelli RM, Baya M, Beal JS, Bello SM, Boddy WJ, Bradt DW, Burkart DL, Butler NE, Campbell J, Cassell MA, Corbani LE, Cousins SL, Dahmen DJ, Dene H, Diehl AD, Drabkin HJ, Frazer KS, Frost P, Glass LH, Goldsmith CW, Grant PL, Lennon-Pierce M, Lewis J, Lu I, Maltais LJ, McAndrews-Hill M, McClellan L, Miers DB, Miller LA, Ni L, Ormsby JE, Qi D, Reddy TB, Reed DJ, Richards-Smith B, Shaw DR, Sinclair R, Smith CL, Szauter P, Walker MB, Walton DO, Washburn LL, Witham IT, Zhu Y; Mouse Genome Database Group. Eppig JT, et al. Among authors: walton do. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D471-5. doi: 10.1093/nar/gki113. Nucleic Acids Res. 2005. PMID: 15608240 Free PMC article.
Integration of evidence across human and model organism studies: A meeting report.
Palmer RHC, Johnson EC, Won H, Polimanti R, Kapoor M, Chitre A, Bogue MA, Benca-Bachman CE, Parker CC, Verma A, Reynolds T, Ernst J, Bray M, Kwon SB, Lai D, Quach BC, Gaddis NC, Saba L, Chen H, Hawrylycz M, Zhang S, Zhou Y, Mahaffey S, Fischer C, Sanchez-Roige S, Bandrowski A, Lu Q, Shen L, Philip V, Gelernter J, Bierut LJ, Hancock DB, Edenberg HJ, Johnson EO, Nestler EJ, Barr PB, Prins P, Smith DJ, Akbarian S, Thorgeirsson T, Walton D, Baker E, Jacobson D, Palmer AA, Miles M, Chesler EJ, Emerson J, Agrawal A, Martone M, Williams RW. Palmer RHC, et al. Genes Brain Behav. 2021 Apr 23;20(6):e12738. doi: 10.1111/gbb.12738. Online ahead of print. Genes Brain Behav. 2021. PMID: 33893716 Free PMC article. Review.
GenomeMUSter mouse genetic variation service enables multi-trait, multi-population data integration and analyses.
Ball RL, Bogue MA, Liang H, Srivastava A, Ashbrook DG, Lamoureux A, Gerring MW, Hatoum AS, Kim M, He H, Emerson J, Berger AK, Walton DO, Sheppard K, Kassaby BE, Castellanos F, Kunde-Ramamoorthy G, Lu L, Bluis J, Desai S, Sundberg BA, Peltz G, Fang Z, Churchill GA, Williams RW, Agrawal A, Bult CJ, Philip VM, Chesler EJ. Ball RL, et al. Among authors: walton do. bioRxiv [Preprint]. 2023 Aug 10:2023.08.08.552506. doi: 10.1101/2023.08.08.552506. bioRxiv. 2023. PMID: 37609331 Free PMC article. Updated. Preprint.
13 results