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Thalamic control of sensory processing and spindles in a biophysical somatosensory thalamoreticular circuit model of wakefulness and sleep.
Iavarone E, Simko J, Shi Y, Bertschy M, García-Amado M, Litvak P, Kaufmann AK, O'Reilly C, Amsalem O, Abdellah M, Chevtchenko G, Coste B, Courcol JD, Ecker A, Favreau C, Fleury AC, Van Geit W, Gevaert M, Guerrero NR, Herttuainen J, Ivaska G, Kerrien S, King JG, Kumbhar P, Lurie P, Magkanaris I, Muddapu VR, Nair J, Pereira FL, Perin R, Petitjean F, Ranjan R, Reimann M, Soltuzu L, Sy MF, Tuncel MA, Ulbrich A, Wolf M, Clascá F, Markram H, Hill SL. Iavarone E, et al. Among authors: shi y. Cell Rep. 2023 Mar 28;42(3):112200. doi: 10.1016/j.celrep.2023.112200. Epub 2023 Mar 1. Cell Rep. 2023. PMID: 36867532 Free PMC article.
Reconstruction and Simulation of Neocortical Microcircuitry.
Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, Chindemi G, Courcol JD, Delalondre F, Delattre V, Druckmann S, Dumusc R, Dynes J, Eilemann S, Gal E, Gevaert ME, Ghobril JP, Gidon A, Graham JW, Gupta A, Haenel V, Hay E, Heinis T, Hernando JB, Hines M, Kanari L, Keller D, Kenyon J, Khazen G, Kim Y, King JG, Kisvarday Z, Kumbhar P, Lasserre S, Le Bé JV, Magalhães BR, Merchán-Pérez A, Meystre J, Morrice BR, Muller J, Muñoz-Céspedes A, Muralidhar S, Muthurasa K, Nachbaur D, Newton TH, Nolte M, Ovcharenko A, Palacios J, Pastor L, Perin R, Ranjan R, Riachi I, Rodríguez JR, Riquelme JL, Rössert C, Sfyrakis K, Shi Y, Shillcock JC, Silberberg G, Silva R, Tauheed F, Telefont M, Toledo-Rodriguez M, Tränkler T, Van Geit W, Díaz JV, Walker R, Wang Y, Zaninetta SM, DeFelipe J, Hill SL, Segev I, Schürmann F. Markram H, et al. Among authors: shi y. Cell. 2015 Oct 8;163(2):456-92. doi: 10.1016/j.cell.2015.09.029. Cell. 2015. PMID: 26451489 Free article.
A null model of the mouse whole-neocortex micro-connectome.
Reimann MW, Gevaert M, Shi Y, Lu H, Markram H, Muller E. Reimann MW, et al. Among authors: shi y. Nat Commun. 2019 Aug 29;10(1):3903. doi: 10.1038/s41467-019-11630-x. Nat Commun. 2019. PMID: 31467291 Free PMC article.
The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex.
Ramaswamy S, Courcol JD, Abdellah M, Adaszewski SR, Antille N, Arsever S, Atenekeng G, Bilgili A, Brukau Y, Chalimourda A, Chindemi G, Delalondre F, Dumusc R, Eilemann S, Gevaert ME, Gleeson P, Graham JW, Hernando JB, Kanari L, Katkov Y, Keller D, King JG, Ranjan R, Reimann MW, Rössert C, Shi Y, Shillcock JC, Telefont M, Van Geit W, Diaz JV, Walker R, Wang Y, Zaninetta SM, DeFelipe J, Hill SL, Muller J, Segev I, Schürmann F, Muller EB, Markram H. Ramaswamy S, et al. Among authors: shi y. Front Neural Circuits. 2015 Oct 8;9:44. doi: 10.3389/fncir.2015.00044. eCollection 2015. Front Neural Circuits. 2015. PMID: 26500503 Free PMC article. No abstract available.
Objective Morphological Classification of Neocortical Pyramidal Cells.
Kanari L, Ramaswamy S, Shi Y, Morand S, Meystre J, Perin R, Abdellah M, Wang Y, Hess K, Markram H. Kanari L, et al. Among authors: shi y. Cereb Cortex. 2019 Apr 1;29(4):1719-1735. doi: 10.1093/cercor/bhy339. Cereb Cortex. 2019. PMID: 30715238 Free PMC article.
The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow.
Migliore R, Lupascu CA, Bologna LL, Romani A, Courcol JD, Antonel S, Van Geit WAH, Thomson AM, Mercer A, Lange S, Falck J, Rössert CA, Shi Y, Hagens O, Pezzoli M, Freund TF, Kali S, Muller EB, Schürmann F, Markram H, Migliore M. Migliore R, et al. Among authors: shi y. PLoS Comput Biol. 2018 Sep 17;14(9):e1006423. doi: 10.1371/journal.pcbi.1006423. eCollection 2018 Sep. PLoS Comput Biol. 2018. PMID: 30222740 Free PMC article.
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