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A genome-wide map of DNA replication at single-molecule resolution in the malaria parasite Plasmodium falciparum.
Nucleic Acids Res. 2023 Apr 11;51(6):2709-2724. doi: 10.1093/nar/gkad093.
Nucleic Acids Res. 2023.
PMID: 36808528
Free PMC article.
Replication stress generates distinctive landscapes of DNA copy number alterations and chromosome scale losses.
Shaikh N, Mazzagatti A, De Angelis S, Johnson SC, Bakker B, Spierings DCJ, Wardenaar R, Maniati E, Wang J, Boemo MA, Foijer F, McClelland SE.
Shaikh N, et al. Among authors: boemo ma.
Genome Biol. 2022 Oct 20;23(1):223. doi: 10.1186/s13059-022-02781-0.
Genome Biol. 2022.
PMID: 36266663
Free PMC article.
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DNAscent v2: detecting replication forks in nanopore sequencing data with deep learning.
Boemo MA.
Boemo MA.
BMC Genomics. 2021 Jun 9;22(1):430. doi: 10.1186/s12864-021-07736-6.
BMC Genomics. 2021.
PMID: 34107894
Free PMC article.
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An Autonomous Oscillation Times and Executes Centriole Biogenesis.
Aydogan MG, Steinacker TL, Mofatteh M, Wilmott ZM, Zhou FY, Gartenmann L, Wainman A, Saurya S, Novak ZA, Wong SS, Goriely A, Boemo MA, Raff JW.
Aydogan MG, et al. Among authors: boemo ma.
Cell. 2020 Jun 25;181(7):1566-1581.e27. doi: 10.1016/j.cell.2020.05.018. Epub 2020 Jun 11.
Cell. 2020.
PMID: 32531200
Free PMC article.
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The Beacon Calculus: A formal method for the flexible and concise modelling of biological systems.
Boemo MA, Cardelli L, Nieduszynski CA.
Boemo MA, et al.
PLoS Comput Biol. 2020 Mar 9;16(3):e1007651. doi: 10.1371/journal.pcbi.1007651. eCollection 2020 Mar.
PLoS Comput Biol. 2020.
PMID: 32150540
Free PMC article.
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Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads.
Müller CA, Boemo MA, Spingardi P, Kessler BM, Kriaucionis S, Simpson JT, Nieduszynski CA.
Müller CA, et al. Among authors: boemo ma.
Nat Methods. 2019 May;16(5):429-436. doi: 10.1038/s41592-019-0394-y. Epub 2019 Apr 22.
Nat Methods. 2019.
PMID: 31011185
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Mathematical modelling of a hypoxia-regulated oncolytic virus delivered by tumour-associated macrophages.
Boemo MA, Byrne HM.
Boemo MA, et al.
J Theor Biol. 2019 Jan 14;461:102-116. doi: 10.1016/j.jtbi.2018.10.044. Epub 2018 Oct 23.
J Theor Biol. 2019.
PMID: 30359572
Free PMC article.
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The Formal Language and Design Principles of Autonomous DNA Walker Circuits.
Boemo MA, Lucas AE, Turberfield AJ, Cardelli L.
Boemo MA, et al.
ACS Synth Biol. 2016 Aug 19;5(8):878-84. doi: 10.1021/acssynbio.5b00275. Epub 2016 May 11.
ACS Synth Biol. 2016.
PMID: 27114350
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