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DandD: efficient measurement of sequence growth and similarity.
Bonnie JK, Ahmed O, Langmead B. Bonnie JK, et al. Among authors: ahmed o. bioRxiv [Preprint]. 2023 Feb 3:2023.02.02.526837. doi: 10.1101/2023.02.02.526837. bioRxiv. 2023. PMID: 36778393 Free PMC article. Updated. Preprint.
Megadepth: efficient coverage quantification for BigWigs and BAMs.
Wilks C, Ahmed O, Baker DN, Zhang D, Collado-Torres L, Langmead B. Wilks C, et al. Among authors: ahmed o. Bioinformatics. 2021 Sep 29;37(18):3014-3016. doi: 10.1093/bioinformatics/btab152. Bioinformatics. 2021. PMID: 33693500 Free PMC article.
Pan-genomic matching statistics for targeted nanopore sequencing.
Ahmed O, Rossi M, Kovaka S, Schatz MC, Gagie T, Boucher C, Langmead B. Ahmed O, et al. iScience. 2021 Jun 8;24(6):102696. doi: 10.1016/j.isci.2021.102696. eCollection 2021 Jun 25. iScience. 2021. PMID: 34195571 Free PMC article.
Efficient taxa identification using a pangenome index.
Ahmed O, Rossi M, Boucher C, Langmead B. Ahmed O, et al. Genome Res. 2023 Jul;33(7):1069-1077. doi: 10.1101/gr.277642.123. Epub 2023 May 31. Genome Res. 2023. PMID: 37258301 Free PMC article.
Movi: a fast and cache-efficient full-text pangenome index.
Zakeri M, Brown NK, Ahmed OY, Gagie T, Langmead B. Zakeri M, et al. bioRxiv [Preprint]. 2024 Feb 15:2023.11.04.565615. doi: 10.1101/2023.11.04.565615. bioRxiv. 2024. PMID: 37961660 Free PMC article. Preprint.
The JVIR and Transfusion Medicine.
Gaba RC, Ahmed O, Lokken RP, Sze DY. Gaba RC, et al. Among authors: ahmed o. J Vasc Interv Radiol. 2024 May 16:S1051-0443(24)00341-5. doi: 10.1016/j.jvir.2024.05.007. Online ahead of print. J Vasc Interv Radiol. 2024. PMID: 38761991 No abstract available.
1,279 results