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simpiTB - a pipeline designed to extract meaningful information from whole genome sequencing data of Mycobacterium tuberculosis complex, allows to combine genomic, phylogenetic and clustering analyses in existing SITVIT databases.
Infect Genet Evol. 2023 Sep;113:105466. doi: 10.1016/j.meegid.2023.105466. Epub 2023 Jun 16.
Infect Genet Evol. 2023.
PMID: 37331497
Free article.
KaruBioNet: a network and discussion group for a better collaboration and structuring of bioinformatics in Guadeloupe (French West Indies).
Couvin D, Dereeper A, Meyer DF, Noroy C, Gaete S, Bhakkan B, Poullet N, Gaspard S, Bezault E, Marcelino I, Pruneau L, Segretier W, Stattner E, Cazenave D, Garnier M, Pot M, Tressières B, Deloumeaux J, Breurec S, Ferdinand S, Gonzalez-Rizzo S, Reynaud Y.
Couvin D, et al. Among authors: cazenave d.
Bioinform Adv. 2022 Feb 18;2(1):vbac010. doi: 10.1093/bioadv/vbac010. eCollection 2022.
Bioinform Adv. 2022.
PMID: 36699379
Free PMC article.
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getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories.
Moco V, Cazenave D, Garnier M, Pot M, Marcelino I, Talarmin A, Guyomard-Rabenirina S, Breurec S, Ferdinand S, Dereeper A, Reynaud Y, Couvin D.
Moco V, et al. Among authors: cazenave d.
BMC Bioinformatics. 2022 Jul 8;23(1):268. doi: 10.1186/s12859-022-04809-5.
BMC Bioinformatics. 2022.
PMID: 35804320
Free PMC article.
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