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ChromaFactor: deconvolution of single-molecule chromatin organization with non-negative matrix factorization.
bioRxiv [Preprint]. 2023 Nov 22:2023.11.22.568268. doi: 10.1101/2023.11.22.568268.
bioRxiv. 2023.
PMID: 38045231
Free PMC article.
Preprint.
In silico discovery of repetitive elements as key sequence determinants of 3D genome folding.
Gunsalus LM, Keiser MJ, Pollard KS.
Gunsalus LM, et al.
Cell Genom. 2023 Sep 25;3(10):100410. doi: 10.1016/j.xgen.2023.100410. eCollection 2023 Oct 11.
Cell Genom. 2023.
PMID: 37868032
Free PMC article.
Item in Clipboard
Comparing chromatin contact maps at scale: methods and insights.
Gunsalus LM, McArthur E, Gjoni K, Kuang S, Pittman M, Capra JA, Pollard KS.
Gunsalus LM, et al.
Res Sq [Preprint]. 2023 May 23:rs.3.rs-2842981. doi: 10.21203/rs.3.rs-2842981/v1.
Res Sq. 2023.
PMID: 37292728
Free PMC article.
Preprint.
Item in Clipboard
Comparing chromatin contact maps at scale: methods and insights.
Gunsalus LM, McArthur E, Gjoni K, Kuang S, Pittman M, Capra JA, Pollard KS.
Gunsalus LM, et al.
bioRxiv [Preprint]. 2023 Apr 4:2023.04.04.535480. doi: 10.1101/2023.04.04.535480.
bioRxiv. 2023.
PMID: 37066196
Free PMC article.
Preprint.
Item in Clipboard
Cell type-specific histone acetylation profiling of Alzheimer's disease subjects and integration with genetics.
Ramamurthy E, Welch G, Cheng J, Yuan Y, Gunsalus L, Bennett DA, Tsai LH, Pfenning AR.
Ramamurthy E, et al. Among authors: gunsalus l.
Front Mol Neurosci. 2023 Jan 6;15:948456. doi: 10.3389/fnmol.2022.948456. eCollection 2022.
Front Mol Neurosci. 2023.
PMID: 36683855
Free PMC article.
Item in Clipboard
Robust Sequence Determinants of α-Synuclein Toxicity in Yeast Implicate Membrane Binding.
Newberry RW, Arhar T, Costello J, Hartoularos GC, Maxwell AM, Naing ZZC, Pittman M, Reddy NR, Schwarz DMC, Wassarman DR, Wu TS, Barrero D, Caggiano C, Catching A, Cavazos TB, Estes LS, Faust B, Fink EA, Goldman MA, Gomez YK, Gordon MG, Gunsalus LM, Hoppe N, Jaime-Garza M, Johnson MC, Jones MG, Kung AF, Lopez KE, Lumpe J, Martyn C, McCarthy EE, Miller-Vedam LE, Navarro EJ, Palar A, Pellegrino J, Saylor W, Stephens CA, Strickland J, Torosyan H, Wankowicz SA, Wong DR, Wong G, Redding S, Chow ED, DeGrado WF, Kampmann M.
Newberry RW, et al. Among authors: gunsalus lm.
ACS Chem Biol. 2020 Aug 21;15(8):2137-2153. doi: 10.1021/acschembio.0c00339. Epub 2020 Aug 12.
ACS Chem Biol. 2020.
PMID: 32786289
Free PMC article.
Item in Clipboard
Learning Molecular Representations for Medicinal Chemistry.
Chuang KV, Gunsalus LM, Keiser MJ.
Chuang KV, et al. Among authors: gunsalus lm.
J Med Chem. 2020 Aug 27;63(16):8705-8722. doi: 10.1021/acs.jmedchem.0c00385. Epub 2020 May 15.
J Med Chem. 2020.
PMID: 32366098
Review.
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