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A simplified and defined serum-free medium for cultivating fat across species.
iScience. 2022 Dec 17;26(1):105822. doi: 10.1016/j.isci.2022.105822. eCollection 2023 Jan 20.
iScience. 2022.
PMID: 36636339
Free PMC article.
Controlling gene expression with deep generative design of regulatory DNA.
Zrimec J, Fu X, Muhammad AS, Skrekas C, Jauniskis V, Speicher NK, Börlin CS, Verendel V, Chehreghani MH, Dubhashi D, Siewers V, David F, Nielsen J, Zelezniak A.
Zrimec J, et al. Among authors: borlin cs.
Nat Commun. 2022 Aug 30;13(1):5099. doi: 10.1038/s41467-022-32818-8.
Nat Commun. 2022.
PMID: 36042233
Free PMC article.
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Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure.
Zrimec J, Börlin CS, Buric F, Muhammad AS, Chen R, Siewers V, Verendel V, Nielsen J, Töpel M, Zelezniak A.
Zrimec J, et al. Among authors: borlin cs.
Nat Commun. 2020 Dec 1;11(1):6141. doi: 10.1038/s41467-020-19921-4.
Nat Commun. 2020.
PMID: 33262328
Free PMC article.
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The transcription factor Leu3 shows differential binding behavior in response to changing leucine availability.
Börlin CS, Nielsen J, Siewers V.
Börlin CS, et al.
FEMS Microbiol Lett. 2020 Jul 1;367(13):fnaa107. doi: 10.1093/femsle/fnaa107.
FEMS Microbiol Lett. 2020.
PMID: 32589214
Free PMC article.
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A bioinformatic pipeline to analyze ChIP-exo datasets.
Börlin CS, Bergenholm D, Holland P, Nielsen J.
Börlin CS, et al.
Biol Methods Protoc. 2019 Aug 6;4(1):bpz011. doi: 10.1093/biomethods/bpz011. eCollection 2019.
Biol Methods Protoc. 2019.
PMID: 32395628
Free PMC article.
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Predictive models of eukaryotic transcriptional regulation reveals changes in transcription factor roles and promoter usage between metabolic conditions.
Holland P, Bergenholm D, Börlin CS, Liu G, Nielsen J.
Holland P, et al. Among authors: borlin cs.
Nucleic Acids Res. 2019 Jun 4;47(10):4986-5000. doi: 10.1093/nar/gkz253.
Nucleic Acids Res. 2019.
PMID: 30976803
Free PMC article.
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Saccharomyces cerevisiae displays a stable transcription start site landscape in multiple conditions.
Börlin CS, Cvetesic N, Holland P, Bergenholm D, Siewers V, Lenhard B, Nielsen J.
Börlin CS, et al.
FEMS Yeast Res. 2019 Mar 1;19(2):foy128. doi: 10.1093/femsyr/foy128.
FEMS Yeast Res. 2019.
PMID: 30590648
Free PMC article.
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Agent-based modeling of autophagy reveals emergent regulatory behavior of spatio-temporal autophagy dynamics.
Börlin CS, Lang V, Hamacher-Brady A, Brady NR.
Börlin CS, et al.
Cell Commun Signal. 2014 Sep 10;12:56. doi: 10.1186/s12964-014-0056-8.
Cell Commun Signal. 2014.
PMID: 25214434
Free PMC article.
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