Fire AZ - Search Results

1

Restriction Endonuclease-Based Modification-Dependent Enrichment (REMoDE) of DNA for Metagenomic Sequencing.

Enam SU, Cherry JL, Leonard SR, Zheludev IN, Lipman DJ, Fire AZ. Enam SU, et al. Among authors: fire az. Appl Environ Microbiol. 2023 Jan 31;89(1):e0167022. doi: 10.1128/aem.01670-22. Epub 2022 Dec 15. Appl Environ Microbiol. 2023. PMID: 36519847 Free PMC article.

2

Viroid-like colonists of human microbiomes.

Zheludev IN, Edgar RC, Lopez-Galiano MJ, de la Peña M, Babaian A, Bhatt AS, Fire AZ. Zheludev IN, et al. Among authors: fire az. bioRxiv [Preprint]. 2024 Jan 21:2024.01.20.576352. doi: 10.1101/2024.01.20.576352. bioRxiv. 2024. PMID: 38293115 Free PMC article. Preprint.

3

Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome.

Wolf YI, Silas S, Wang Y, Wu S, Bocek M, Kazlauskas D, Krupovic M, Fire A, Dolja VV, Koonin EV. Wolf YI, et al. Nat Microbiol. 2020 Oct;5(10):1262-1270. doi: 10.1038/s41564-020-0755-4. Epub 2020 Jul 20. Nat Microbiol. 2020. PMID: 32690954 Free PMC article.

4

An Extensive Meta-Metagenomic Search Identifies SARS-CoV-2-Homologous Sequences in Pangolin Lung Viromes.

Wahba L, Jain N, Fire AZ, Shoura MJ, Artiles KL, McCoy MJ, Jeong DE. Wahba L, et al. Among authors: fire az. mSphere. 2020 May 6;5(3):e00160-20. doi: 10.1128/mSphere.00160-20. mSphere. 2020. PMID: 32376697 Free PMC article.

5

Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls.

Witten D, Tibshirani R, Gu SG, Fire A, Lui WO. Witten D, et al. BMC Biol. 2010 May 11;8:58. doi: 10.1186/1741-7007-8-58. BMC Biol. 2010. PMID: 20459774 Free PMC article.

6

Context-dependent DNA polymerization effects can masquerade as DNA modification signals.

Takahashi Y, Shoura M, Fire A, Morishita S. Takahashi Y, et al. BMC Genomics. 2022 Mar 31;23(1):249. doi: 10.1186/s12864-022-08471-2. BMC Genomics. 2022. PMID: 35361121 Free PMC article.

7

Partitioning the C. elegans genome by nucleosome modification, occupancy, and positioning.

Gu SG, Fire A. Gu SG, et al. Chromosoma. 2010 Feb;119(1):73-87. doi: 10.1007/s00412-009-0235-3. Epub 2009 Aug 25. Chromosoma. 2010. PMID: 19705140 Free PMC article.

8

Gamete-type dependent crossover interference levels in a defined region of Caenorhabditis elegans chromosome V.

Gabdank I, Fire AZ. Gabdank I, et al. Among authors: fire az. G3 (Bethesda). 2014 Jan 10;4(1):117-20. doi: 10.1534/g3.113.008672. G3 (Bethesda). 2014. PMID: 24240780 Free PMC article.

9

Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin.

Johnson SM, Tan FJ, McCullough HL, Riordan DP, Fire AZ. Johnson SM, et al. Among authors: fire az. Genome Res. 2006 Dec;16(12):1505-16. doi: 10.1101/gr.5560806. Epub 2006 Oct 12. Genome Res. 2006. PMID: 17038564 Free PMC article.

10

Functional relevance of "seed" and "non-seed" sequences in microRNA-mediated promotion of C. elegans developmental progression.

Zhang H, Artiles KL, Fire AZ. Zhang H, et al. Among authors: fire az. RNA. 2015 Nov;21(11):1980-92. doi: 10.1261/rna.053793.115. Epub 2015 Sep 18. RNA. 2015. PMID: 26385508 Free PMC article.

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