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A transformer-based deep-learning approach for classifying brain metastases into primary organ sites using clinical whole-brain MRI images.
Lyu Q, Namjoshi SV, McTyre E, Topaloglu U, Barcus R, Chan MD, Cramer CK, Debinski W, Gurcan MN, Lesser GJ, Lin HK, Munden RF, Pasche BC, Sai KKS, Strowd RE, Tatter SB, Watabe K, Zhang W, Wang G, Whitlow CT. Lyu Q, et al. Among authors: topaloglu u. Patterns (N Y). 2022 Oct 27;3(11):100613. doi: 10.1016/j.patter.2022.100613. eCollection 2022 Nov 11. Patterns (N Y). 2022. PMID: 36419451 Free PMC article.
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.
Haendel MA, Chute CG, Bennett TD, Eichmann DA, Guinney J, Kibbe WA, Payne PRO, Pfaff ER, Robinson PN, Saltz JH, Spratt H, Suver C, Wilbanks J, Wilcox AB, Williams AE, Wu C, Blacketer C, Bradford RL, Cimino JJ, Clark M, Colmenares EW, Francis PA, Gabriel D, Graves A, Hemadri R, Hong SS, Hripscak G, Jiao D, Klann JG, Kostka K, Lee AM, Lehmann HP, Lingrey L, Miller RT, Morris M, Murphy SN, Natarajan K, Palchuk MB, Sheikh U, Solbrig H, Visweswaran S, Walden A, Walters KM, Weber GM, Zhang XT, Zhu RL, Amor B, Girvin AT, Manna A, Qureshi N, Kurilla MG, Michael SG, Portilla LM, Rutter JL, Austin CP, Gersing KR; N3C Consortium. Haendel MA, et al. J Am Med Inform Assoc. 2021 Mar 1;28(3):427-443. doi: 10.1093/jamia/ocaa196. J Am Med Inform Assoc. 2021. PMID: 32805036 Free PMC article.
Assessment of Regional Variability in COVID-19 Outcomes Among Patients With Cancer in the United States.
Hawley JE, Sun T, Chism DD, Duma N, Fu JC, Gatson NTN, Mishra S, Nguyen RH, Reid SA, Serrano OK, Singh SRK, Venepalli NK, Bakouny Z, Bashir B, Bilen MA, Caimi PF, Choueiri TK, Dawsey SJ, Fecher LA, Flora DB, Friese CR, Glover MJ, Gonzalez CJ, Goyal S, Halfdanarson TR, Hershman DL, Khan H, Labaki C, Lewis MA, McKay RR, Messing I, Pennell NA, Puc M, Ravindranathan D, Rhodes TD, Rivera AV, Roller J, Schwartz GK, Shah SA, Shaya JA, Streckfuss M, Thompson MA, Wulff-Burchfield EM, Xie Z, Yu PP, Warner JL, Shah DP, French B, Hwang C; COVID-19 and Cancer Consortium (CCC19). Hawley JE, et al. JAMA Netw Open. 2022 Jan 4;5(1):e2142046. doi: 10.1001/jamanetworkopen.2021.42046. JAMA Netw Open. 2022. PMID: 34982158 Free PMC article.
An adverse event capture and management system for cancer studies.
Lencioni A, Hutchins L, Annis S, Chen W, Ermisoglu E, Feng Z, Mack K, Simpson K, Lane C, Topaloglu U. Lencioni A, et al. Among authors: topaloglu u. BMC Bioinformatics. 2015;16 Suppl 13(Suppl 13):S6. doi: 10.1186/1471-2105-16-S13-S6. Epub 2015 Sep 25. BMC Bioinformatics. 2015. PMID: 26424052 Free PMC article.
CLARA: an integrated clinical research administration system.
Bian J, Xie M, Hogan W, Hutchins L, Topaloglu U, Lane C, Holland J, Wells T. Bian J, et al. Among authors: topaloglu u. J Am Med Inform Assoc. 2014 Oct;21(e2):e369-73. doi: 10.1136/amiajnl-2013-002616. Epub 2014 Apr 28. J Am Med Inform Assoc. 2014. PMID: 24778201 Free PMC article.
131 results