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IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.
Camargo AP, Nayfach S, Chen IA, Palaniappan K, Ratner A, Chu K, Ritter SJ, Reddy TBK, Mukherjee S, Schulz F, Call L, Neches RY, Woyke T, Ivanova NN, Eloe-Fadrosh EA, Kyrpides NC, Roux S. Camargo AP, et al. Among authors: woyke t. Nucleic Acids Res. 2023 Jan 6;51(D1):D733-D743. doi: 10.1093/nar/gkac1037. Nucleic Acids Res. 2023. PMID: 36399502 Free PMC article.
Symbiosis insights through metagenomic analysis of a microbial consortium.
Woyke T, Teeling H, Ivanova NN, Huntemann M, Richter M, Gloeckner FO, Boffelli D, Anderson IJ, Barry KW, Shapiro HJ, Szeto E, Kyrpides NC, Mussmann M, Amann R, Bergin C, Ruehland C, Rubin EM, Dubilier N. Woyke T, et al. Nature. 2006 Oct 26;443(7114):950-5. doi: 10.1038/nature05192. Epub 2006 Sep 17. Nature. 2006. PMID: 16980956
Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3.
Lucas S, Han J, Lapidus A, Cheng JF, Goodwin LA, Pitluck S, Peters L, Mikhailova N, Teshima H, Detter JC, Han C, Tapia R, Land M, Hauser L, Kyrpides NC, Ivanova N, Pagani I, Vannier P, Oger P, Bartlett DH, Noll KM, Woyke T, Jebbar M. Lucas S, et al. Among authors: woyke t. J Bacteriol. 2012 Nov;194(21):5974-5. doi: 10.1128/JB.01430-12. J Bacteriol. 2012. PMID: 23045491 Free PMC article.
Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).
Anderson I, Chertkov O, Chen A, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Pati A, Palaniappan K, Land M, Pan C, Rohde M, Pukall R, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Mavromatis K. Anderson I, et al. Among authors: woyke t. Stand Genomic Sci. 2012 Jul 30;6(3):1-13. doi: 10.4056/sigs.2736042. Epub 2012 Jul 20. Stand Genomic Sci. 2012. PMID: 23407703 Free PMC article.
Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)).
Anderson I, Munk C, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Mavromatis K, Pagani I, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Rohde M, Tindall BJ, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Ivanova N. Anderson I, et al. Among authors: woyke t. Stand Genomic Sci. 2012 Dec 19;7(2):210-20. doi: 10.4056/sigs.3117229. Epub 2012 Dec 4. Stand Genomic Sci. 2012. PMID: 23408178 Free PMC article.
Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park.
Mead DA, Lucas S, Copeland A, Lapidus A, Cheng JF, Bruce DC, Goodwin LA, Pitluck S, Chertkov O, Zhang X, Detter JC, Han CS, Tapia R, Land M, Hauser LJ, Chang YJ, Kyrpides NC, Ivanova NN, Ovchinnikova G, Woyke T, Brumm C, Hochstein R, Schoenfeld T, Brumm P. Mead DA, et al. Among authors: woyke t. Stand Genomic Sci. 2012 Jul 30;6(3):381-400. doi: 10.4056/sigs.2605792. Epub 2012 Jul 27. Stand Genomic Sci. 2012. PMID: 23408395 Free PMC article.
Insights into the phylogeny and coding potential of microbial dark matter.
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng JF, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, Hedlund BP, Tsiamis G, Sievert SM, Liu WT, Eisen JA, Hallam SJ, Kyrpides NC, Stepanauskas R, Rubin EM, Hugenholtz P, Woyke T. Rinke C, et al. Among authors: woyke t. Nature. 2013 Jul 25;499(7459):431-7. doi: 10.1038/nature12352. Epub 2013 Jul 14. Nature. 2013. PMID: 23851394 Free article.
Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)).
Mavromatis K, Stackebrandt E, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Rohde M, Gronow S, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T. Mavromatis K, et al. Among authors: woyke t. Stand Genomic Sci. 2013 Apr 15;8(1):26-36. doi: 10.4056/sigs.3527032. eCollection 2013 Apr 15. Stand Genomic Sci. 2013. PMID: 23961309 Free PMC article.
Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)).
Mavromatis K, Stackebrandt E, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Land M, Rohde M, Spring S, Göker M, Woyke T, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Mavromatis K, et al. Among authors: woyke t. Stand Genomic Sci. 2013 Apr 15;8(1):47-57. doi: 10.4056/sigs.3547050. eCollection 2013 Apr 15. Stand Genomic Sci. 2013. PMID: 23961311 Free PMC article.
609 results