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Temporal and sequential transcriptional dynamics define lineage shifts in corticogenesis.
Mukhtar T, Breda J, Adam MA, Boareto M, Grobecker P, Karimaddini Z, Grison A, Eschbach K, Chandrasekhar R, Vermeul S, Okoniewski M, Pachkov M, Harwell CC, Atanasoski S, Beisel C, Iber D, van Nimwegen E, Taylor V. Mukhtar T, et al. Among authors: van nimwegen e. EMBO J. 2022 Dec 15;41(24):e111132. doi: 10.15252/embj.2022111132. Epub 2022 Nov 8. EMBO J. 2022. PMID: 36345783 Free PMC article.
Detecting regulatory sites using PhyloGibbs.
Siddharthan R, van Nimwegen E. Siddharthan R, et al. Among authors: van nimwegen e. Methods Mol Biol. 2007;395:381-402. doi: 10.1007/978-1-59745-514-5_24. Methods Mol Biol. 2007. PMID: 17993687
A probabilistic method to detect regulatory modules.
Sinha S, van Nimwegen E, Siggia ED. Sinha S, et al. Among authors: van nimwegen e. Bioinformatics. 2003;19 Suppl 1:i292-301. doi: 10.1093/bioinformatics/btg1040. Bioinformatics. 2003. PMID: 12855472
Neutral evolution of mutational robustness.
van Nimwegen E, Crutchfield JP, Huynen M. van Nimwegen E, et al. Proc Natl Acad Sci U S A. 1999 Aug 17;96(17):9716-20. doi: 10.1073/pnas.96.17.9716. Proc Natl Acad Sci U S A. 1999. PMID: 10449760 Free PMC article.
103 results