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Highly-automated, high-throughput replication of yeast-based logic circuit design assessments.
Goldman RP, Moseley R, Roehner N, Cummins B, Vrana JD, Clowers KJ, Bryce D, Beal J, DeHaven M, Nowak J, Higa T, Biggers V, Lee P, Hunt JP, Mosqueda L, Haase SB, Weston M, Zheng G, Deckard A, Gopaulakrishnan S, Stubbs JF, Gaffney NI, Vaughn MW, Maheshri N, Mikhalev E, Bartley B, Markeloff R, Mitchell T, Nguyen T, Sumorok D, Walczak N, Myers C, Zundel Z, Hatch B, Scholz J, Colonna-Romano J. Goldman RP, et al. Among authors: vrana jd. Synth Biol (Oxf). 2022 Oct 6;7(1):ysac018. doi: 10.1093/synbio/ysac018. eCollection 2022. Synth Biol (Oxf). 2022. PMID: 36285185 Free PMC article.
Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop.
Cummins B, Vrana J, Moseley RC, Eramian H, Deckard A, Fontanarrosa P, Bryce D, Weston M, Zheng G, Nowak J, Motta FC, Eslami M, Johnson KL, Goldman RP, Myers CJ, Johnson T, Vaughn MW, Gaffney N, Urrutia J, Gopaulakrishnan S, Biggers V, Higa TR, Mosqueda LA, Gameiro M, Gedeon T, Mischaikow K, Beal J, Bartley B, Mitchell T, Nguyen TT, Roehner N, Haase SB. Cummins B, et al. Synth Biol (Oxf). 2023 Mar 28;8(1):ysad005. doi: 10.1093/synbio/ysad005. eCollection 2023. Synth Biol (Oxf). 2023. PMID: 37073283 Free PMC article.
Aquarium: open-source laboratory software for design, execution and data management.
Vrana J, de Lange O, Yang Y, Newman G, Saleem A, Miller A, Cordray C, Halabiya S, Parks M, Lopez E, Goldberg S, Keller B, Strickland D, Klavins E. Vrana J, et al. Synth Biol (Oxf). 2021 Jan 30;6(1):ysab006. doi: 10.1093/synbio/ysab006. eCollection 2021. Synth Biol (Oxf). 2021. PMID: 34151028 Free PMC article.
Digital logic circuits in yeast with CRISPR-dCas9 NOR gates.
Gander MW, Vrana JD, Voje WE, Carothers JM, Klavins E. Gander MW, et al. Among authors: vrana jd. Nat Commun. 2017 May 25;8:15459. doi: 10.1038/ncomms15459. Nat Commun. 2017. PMID: 28541304 Free PMC article.
Benchmarking of optical dimerizer systems.
Pathak GP, Strickland D, Vrana JD, Tucker CL. Pathak GP, et al. Among authors: vrana jd. ACS Synth Biol. 2014 Nov 21;3(11):832-8. doi: 10.1021/sb500291r. Epub 2014 Nov 5. ACS Synth Biol. 2014. PMID: 25350266 Free PMC article.
Tools for controlling protein interactions using light.
Tucker CL, Vrana JD, Kennedy MJ. Tucker CL, et al. Among authors: vrana jd. Curr Protoc Cell Biol. 2014 Sep 2;64:17.16.1-20. doi: 10.1002/0471143030.cb1716s64. Curr Protoc Cell Biol. 2014. PMID: 25181301 Free PMC article. Review.
12 results