Zhao D - Search Results

1

Boosting single-cell gene regulatory network reconstruction via bulk-cell transcriptomic data.

Shu H, Ding F, Zhou J, Xue Y, Zhao D, Zeng J, Ma J. Shu H, et al. Among authors: zhao d. Brief Bioinform. 2022 Sep 20;23(5):bbac389. doi: 10.1093/bib/bbac389. Brief Bioinform. 2022. PMID: 36070863

2

ACME: pan-specific peptide-MHC class I binding prediction through attention-based deep neural networks.

Hu Y, Wang Z, Hu H, Wan F, Chen L, Xiong Y, Wang X, Zhao D, Huang W, Zeng J. Hu Y, et al. Among authors: zhao d. Bioinformatics. 2019 Dec 1;35(23):4946-4954. doi: 10.1093/bioinformatics/btz427. Bioinformatics. 2019. PMID: 31120490

3

EXP2SL: A Machine Learning Framework for Cell-Line-Specific Synthetic Lethality Prediction.

Wan F, Li S, Tian T, Lei Y, Zhao D, Zeng J. Wan F, et al. Among authors: zhao d. Front Pharmacol. 2020 Feb 28;11:112. doi: 10.3389/fphar.2020.00112. eCollection 2020. Front Pharmacol. 2020. PMID: 32184722 Free PMC article.

4

Riboexp: an interpretable reinforcement learning framework for ribosome density modeling.

Hu H, Liu X, Xiao A, Li Y, Zhang C, Jiang T, Zhao D, Song S, Zeng J. Hu H, et al. Among authors: zhao d. Brief Bioinform. 2021 Sep 2;22(5):bbaa412. doi: 10.1093/bib/bbaa412. Brief Bioinform. 2021. PMID: 33479731

5

A machine learning-based framework for modeling transcription elongation.

Feng P, Xiao A, Fang M, Wan F, Li S, Lang P, Zhao D, Zeng J. Feng P, et al. Among authors: zhao d. Proc Natl Acad Sci U S A. 2021 Feb 9;118(6):e2007450118. doi: 10.1073/pnas.2007450118. Proc Natl Acad Sci U S A. 2021. PMID: 33526657 Free PMC article.

6

Modeling multi-species RNA modification through multi-task curriculum learning.

Xiong Y, He X, Zhao D, Tian T, Hong L, Jiang T, Zeng J. Xiong Y, et al. Among authors: zhao d. Nucleic Acids Res. 2021 Apr 19;49(7):3719-3734. doi: 10.1093/nar/gkab124. Nucleic Acids Res. 2021. PMID: 33744973 Free PMC article.

7

Full-length ribosome density prediction by a multi-input and multi-output model.

Tian T, Li S, Lang P, Zhao D, Zeng J. Tian T, et al. Among authors: zhao d. PLoS Comput Biol. 2021 Mar 26;17(3):e1008842. doi: 10.1371/journal.pcbi.1008842. eCollection 2021 Mar. PLoS Comput Biol. 2021. PMID: 33770074 Free PMC article.

8

Understanding the phase separation characteristics of nucleocapsid protein provides a new therapeutic opportunity against SARS-CoV-2.

Zhao D, Xu W, Zhang X, Wang X, Ge Y, Yuan E, Xiong Y, Wu S, Li S, Wu N, Tian T, Feng X, Shu H, Lang P, Li J, Zhu F, Shen X, Li H, Li P, Zeng J. Zhao D, et al. Protein Cell. 2021 Sep;12(9):734-740. doi: 10.1007/s13238-021-00832-z. Epub 2021 Mar 26. Protein Cell. 2021. PMID: 33770364 Free PMC article. No abstract available.

9

An integrative drug repositioning framework discovered a potential therapeutic agent targeting COVID-19.

Ge Y, Tian T, Huang S, Wan F, Li J, Li S, Wang X, Yang H, Hong L, Wu N, Yuan E, Luo Y, Cheng L, Hu C, Lei Y, Shu H, Feng X, Jiang Z, Wu Y, Chi Y, Guo X, Cui L, Xiao L, Li Z, Yang C, Miao Z, Chen L, Li H, Zeng H, Zhao D, Zhu F, Shen X, Zeng J. Ge Y, et al. Among authors: zhao d. Signal Transduct Target Ther. 2021 Apr 24;6(1):165. doi: 10.1038/s41392-021-00568-6. Signal Transduct Target Ther. 2021. PMID: 33895786 Free PMC article.

10

A deep-learning framework for multi-level peptide-protein interaction prediction.

Lei Y, Li S, Liu Z, Wan F, Tian T, Li S, Zhao D, Zeng J. Lei Y, et al. Among authors: zhao d. Nat Commun. 2021 Sep 15;12(1):5465. doi: 10.1038/s41467-021-25772-4. Nat Commun. 2021. PMID: 34526500 Free PMC article.

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