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Spatially Resolved Transcriptomes of Mammalian Kidneys Illustrate the Molecular Complexity and Interactions of Functional Nephron Segments.
Raghubar AM, Pham DT, Tan X, Grice LF, Crawford J, Lam PY, Andersen SB, Yoon S, Teoh SM, Matigian NA, Stewart A, Francis L, Ng MSY, Healy HG, Combes AN, Kassianos AJ, Nguyen Q, Mallett AJ. Raghubar AM, et al. Among authors: andersen sb. Front Med (Lausanne). 2022 Jul 7;9:873923. doi: 10.3389/fmed.2022.873923. eCollection 2022. Front Med (Lausanne). 2022. PMID: 35872784 Free PMC article.
Detection of HPV E7 Transcription at Single-Cell Resolution in Epidermis.
Lukowski SW, Tuong ZK, Noske K, Senabouth A, Nguyen QH, Andersen SB, Soyer HP, Frazer IH, Powell JE. Lukowski SW, et al. Among authors: andersen sb. J Invest Dermatol. 2018 Dec;138(12):2558-2567. doi: 10.1016/j.jid.2018.06.169. Epub 2018 Jun 30. J Invest Dermatol. 2018. PMID: 29964033 Free article.
ascend: R package for analysis of single-cell RNA-seq data.
Senabouth A, Lukowski SW, Hernandez JA, Andersen SB, Mei X, Nguyen QH, Powell JE. Senabouth A, et al. Among authors: andersen sb. Gigascience. 2019 Aug 1;8(8):giz087. doi: 10.1093/gigascience/giz087. Gigascience. 2019. PMID: 31505654 Free PMC article.
Genotype-free demultiplexing of pooled single-cell RNA-seq.
Xu J, Falconer C, Nguyen Q, Crawford J, McKinnon BD, Mortlock S, Senabouth A, Andersen S, Chiu HS, Jiang L, Palpant NJ, Yang J, Mueller MD, Hewitt AW, Pébay A, Montgomery GW, Powell JE, Coin LJM. Xu J, et al. Genome Biol. 2019 Dec 19;20(1):290. doi: 10.1186/s13059-019-1852-7. Genome Biol. 2019. PMID: 31856883 Free PMC article.
Spatial Transcriptomics in Kidney Tissue.
Raghubar AM, Crawford J, Jones K, Lam PY, Andersen SB, Matigian NA, Ng MSY, Healy H, Kassianos AJ, Mallett AJ. Raghubar AM, et al. Among authors: andersen sb. Methods Mol Biol. 2023;2664:233-282. doi: 10.1007/978-1-0716-3179-9_17. Methods Mol Biol. 2023. PMID: 37423994
HOPX-associated molecular programs control cardiomyocyte cell states underpinning cardiac structure and function.
Friedman CE, Cheetham SW, Negi S, Mills RJ, Ogawa M, Redd MA, Chiu HS, Shen S, Sun Y, Mizikovsky D, Bouveret R, Chen X, Voges HK, Paterson S, De Angelis JE, Andersen SB, Cao Y, Wu Y, Jafrani YMA, Yoon S, Faulkner GJ, Smith KA, Porrello E, Harvey RP, Hogan BM, Nguyen Q, Zeng J, Kikuchi K, Hudson JE, Palpant NJ. Friedman CE, et al. Among authors: andersen sb. Dev Cell. 2024 Jan 8;59(1):91-107.e6. doi: 10.1016/j.devcel.2023.11.012. Epub 2023 Dec 12. Dev Cell. 2024. PMID: 38091997
Genome-wide discovery of human splicing branchpoints.
Mercer TR, Clark MB, Andersen SB, Brunck ME, Haerty W, Crawford J, Taft RJ, Nielsen LK, Dinger ME, Mattick JS. Mercer TR, et al. Among authors: andersen sb. Genome Res. 2015 Feb;25(2):290-303. doi: 10.1101/gr.182899.114. Epub 2015 Jan 5. Genome Res. 2015. PMID: 25561518 Free PMC article.
Single-Cell Profiling Identifies Key Pathways Expressed by iPSCs Cultured in Different Commercial Media.
Daniszewski M, Nguyen Q, Chy HS, Singh V, Crombie DE, Kulkarni T, Liang HH, Sivakumaran P, Lidgerwood GE, Hernández D, Conquest A, Rooney LA, Chevalier S, Andersen SB, Senabouth A, Vickers JC, Mackey DA, Craig JE, Laslett AL, Hewitt AW, Powell JE, Pébay A. Daniszewski M, et al. Among authors: andersen sb. iScience. 2018 Sep 28;7:30-39. doi: 10.1016/j.isci.2018.08.016. Epub 2018 Aug 23. iScience. 2018. PMID: 30267684 Free PMC article.
175 results