Vargas J - Search Results

1

Image processing tools for the validation of CryoEM maps.

Sorzano COS, Vilas JL, Ramírez-Aportela E, Krieger J, Del Hoyo D, Herreros D, Fernandez-Giménez E, Marchán D, Macías JR, Sánchez I, Del Caño L, Fonseca-Reyna Y, Conesa P, García-Mena A, Burguet J, García Condado J, Méndez García J, Martínez M, Muñoz-Barrutia A, Marabini R, Vargas J, Carazo JM. Sorzano COS, et al. Among authors: vargas j. Faraday Discuss. 2022 Nov 8;240(0):210-227. doi: 10.1039/d2fd00059h. Faraday Discuss. 2022. PMID: 35861059

2

Two-step interferometry by a regularized optical flow algorithm.

Vargas J, Quiroga JA, Sorzano CO, Estrada JC, Carazo JM. Vargas J, et al. Opt Lett. 2011 Sep 1;36(17):3485-7. doi: 10.1364/OL.36.003485. Opt Lett. 2011. PMID: 21886252

3

Two-step demodulation based on the Gram-Schmidt orthonormalization method.

Vargas J, Quiroga JA, Sorzano CO, Estrada JC, Carazo JM. Vargas J, et al. Opt Lett. 2012 Feb 1;37(3):443-5. doi: 10.1364/OL.37.000443. Opt Lett. 2012. PMID: 22297380 Free article.

4

Multiplicative phase-shifting interferometry using optical flow.

Vargas J, Quiroga JA, Sorzano CO, Estrada JC, Servín M. Vargas J, et al. Appl Opt. 2012 Aug 20;51(24):5903-8. doi: 10.1364/AO.51.005903. Appl Opt. 2012. PMID: 22907020 Free article.

5

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy.

Sorzano CO, de la Rosa Trevín JM, Otón J, Vega JJ, Cuenca J, Zaldívar-Peraza A, Gómez-Blanco J, Vargas J, Quintana A, Marabini R, Carazo JM. Sorzano CO, et al. Among authors: vargas j. Methods Mol Biol. 2013;950:171-93. doi: 10.1007/978-1-62703-137-0_11. Methods Mol Biol. 2013. PMID: 23086876

6

Shack-Hartmann centroid detection using the spiral phase transform.

Vargas J, Restrepo R, Estrada JC, Sorzano CO, Du YZ, Carazo JM. Vargas J, et al. Appl Opt. 2012 Oct 20;51(30):7362-7. doi: 10.1364/AO.51.007362. Appl Opt. 2012. PMID: 23089793

7

FASTDEF: fast defocus and astigmatism estimation for high-throughput transmission electron microscopy.

Vargas J, Otón J, Marabini R, Jonic S, de la Rosa-Trevín JM, Carazo JM, Sorzano CO. Vargas J, et al. J Struct Biol. 2013 Feb;181(2):136-48. doi: 10.1016/j.jsb.2012.12.006. Epub 2012 Dec 20. J Struct Biol. 2013. PMID: 23261401

8

On the development of three new tools for organizing and sharing information in three-dimensional electron microscopy.

Marabini R, Macias JR, Vargas J, Quintana A, Sorzano CO, Carazo JM. Marabini R, et al. Among authors: vargas j. Acta Crystallogr D Biol Crystallogr. 2013 May;69(Pt 5):695-700. doi: 10.1107/S0907444913007038. Epub 2013 Apr 19. Acta Crystallogr D Biol Crystallogr. 2013. PMID: 23633578

9

Particle quality assessment and sorting for automatic and semiautomatic particle-picking techniques.

Vargas J, Abrishami V, Marabini R, de la Rosa-Trevín JM, Zaldivar A, Carazo JM, Sorzano COS. Vargas J, et al. J Struct Biol. 2013 Sep;183(3):342-353. doi: 10.1016/j.jsb.2013.07.015. Epub 2013 Aug 6. J Struct Biol. 2013. PMID: 23933392

10

A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs.

Abrishami V, Zaldívar-Peraza A, de la Rosa-Trevín JM, Vargas J, Otón J, Marabini R, Shkolnisky Y, Carazo JM, Sorzano CO. Abrishami V, et al. Among authors: vargas j. Bioinformatics. 2013 Oct 1;29(19):2460-8. doi: 10.1093/bioinformatics/btt429. Epub 2013 Aug 19. Bioinformatics. 2013. PMID: 23958728

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