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Cas12a-Capture: A Novel, Low-Cost, and Scalable Method for Targeted Sequencing.
Mighell TL, Nishida A, O'Connell BL, Miller CV, Grindstaff S, Thornton CA, Adey AC, Doherty D, O'Roak BJ. Mighell TL, et al. Among authors: o connell bl. CRISPR J. 2022 Aug;5(4):548-557. doi: 10.1089/crispr.2021.0140. Epub 2022 Jul 12. CRISPR J. 2022. PMID: 35833801 Free PMC article.
The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution.
Rozenblatt-Rosen O, Regev A, Oberdoerffer P, Nawy T, Hupalowska A, Rood JE, Ashenberg O, Cerami E, Coffey RJ, Demir E, Ding L, Esplin ED, Ford JM, Goecks J, Ghosh S, Gray JW, Guinney J, Hanlon SE, Hughes SK, Hwang ES, Iacobuzio-Donahue CA, Jané-Valbuena J, Johnson BE, Lau KS, Lively T, Mazzilli SA, Pe'er D, Santagata S, Shalek AK, Schapiro D, Snyder MP, Sorger PK, Spira AE, Srivastava S, Tan K, West RB, Williams EH; Human Tumor Atlas Network. Rozenblatt-Rosen O, et al. Cell. 2020 Apr 16;181(2):236-249. doi: 10.1016/j.cell.2020.03.053. Cell. 2020. PMID: 32302568 Free PMC article. Review.
High-content single-cell combinatorial indexing.
Mulqueen RM, Pokholok D, O'Connell BL, Thornton CA, Zhang F, O'Roak BJ, Link J, Yardımcı GG, Sears RC, Steemers FJ, Adey AC. Mulqueen RM, et al. Among authors: o connell bl. Nat Biotechnol. 2021 Dec;39(12):1574-1580. doi: 10.1038/s41587-021-00962-z. Epub 2021 Jul 5. Nat Biotechnol. 2021. PMID: 34226710 Free PMC article.
High-throughput robust single-cell DNA methylation profiling with sciMETv2.
Nichols RV, O'Connell BL, Mulqueen RM, Thomas J, Woodfin AR, Acharya S, Mandel G, Pokholok D, Steemers FJ, Adey AC. Nichols RV, et al. Among authors: o connell bl. Nat Commun. 2022 Dec 9;13(1):7627. doi: 10.1038/s41467-022-35374-3. Nat Commun. 2022. PMID: 36494343 Free PMC article.
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage.
Putnam NH, O'Connell BL, Stites JC, Rice BJ, Blanchette M, Calef R, Troll CJ, Fields A, Hartley PD, Sugnet CW, Haussler D, Rokhsar DS, Green RE. Putnam NH, et al. Genome Res. 2016 Mar;26(3):342-50. doi: 10.1101/gr.193474.115. Epub 2016 Feb 4. Genome Res. 2016. PMID: 26848124 Free PMC article.
Deeply conserved synteny resolves early events in vertebrate evolution.
Simakov O, Marlétaz F, Yue JX, O'Connell B, Jenkins J, Brandt A, Calef R, Tung CH, Huang TK, Schmutz J, Satoh N, Yu JK, Putnam NH, Green RE, Rokhsar DS. Simakov O, et al. Nat Ecol Evol. 2020 Jun;4(6):820-830. doi: 10.1038/s41559-020-1156-z. Epub 2020 Apr 20. Nat Ecol Evol. 2020. PMID: 32313176 Free PMC article.
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling.
Rice ES, Kohno S, John JS, Pham S, Howard J, Lareau LF, O'Connell BL, Hickey G, Armstrong J, Deran A, Fiddes I, Platt RN 2nd, Gresham C, McCarthy F, Kern C, Haan D, Phan T, Schmidt C, Sanford JR, Ray DA, Paten B, Guillette LJ Jr, Green RE. Rice ES, et al. Genome Res. 2017 May;27(5):686-696. doi: 10.1101/gr.213595.116. Epub 2017 Jan 30. Genome Res. 2017. PMID: 28137821 Free PMC article.
Puma genomes from North and South America provide insights into the genomic consequences of inbreeding.
Saremi NF, Supple MA, Byrne A, Cahill JA, Coutinho LL, Dalén L, Figueiró HV, Johnson WE, Milne HJ, O'Brien SJ, O'Connell B, Onorato DP, Riley SPD, Sikich JA, Stahler DR, Villela PMS, Vollmers C, Wayne RK, Eizirik E, Corbett-Detig RB, Green RE, Wilmers CC, Shapiro B. Saremi NF, et al. Nat Commun. 2019 Oct 18;10(1):4769. doi: 10.1038/s41467-019-12741-1. Nat Commun. 2019. PMID: 31628318 Free PMC article.
24 results