Edrisi M - Search Results

1

Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data.

Edrisi M, Valecha MV, Chowdary SBV, Robledo S, Ogilvie HA, Posada D, Zafar H, Nakhleh L. Edrisi M, et al. Bioinformatics. 2022 Jun 24;38(Suppl 1):i195-i202. doi: 10.1093/bioinformatics/btac254. Bioinformatics. 2022. PMID: 35758771 Free PMC article.

2

Assessing the performance of methods for copy number aberration detection from single-cell DNA sequencing data.

Mallory XF, Edrisi M, Navin N, Nakhleh L. Mallory XF, et al. Among authors: edrisi m. PLoS Comput Biol. 2020 Jul 13;16(7):e1008012. doi: 10.1371/journal.pcbi.1008012. eCollection 2020 Jul. PLoS Comput Biol. 2020. PMID: 32658894 Free PMC article.

3

Methods for copy number aberration detection from single-cell DNA-sequencing data.

Mallory XF, Edrisi M, Navin N, Nakhleh L. Mallory XF, et al. Among authors: edrisi m. Genome Biol. 2020 Aug 17;21(1):208. doi: 10.1186/s13059-020-02119-8. Genome Biol. 2020. PMID: 32807205 Free PMC article. Review.

4

Current progress and open challenges for applying deep learning across the biosciences.

Sapoval N, Aghazadeh A, Nute MG, Antunes DA, Balaji A, Baraniuk R, Barberan CJ, Dannenfelser R, Dun C, Edrisi M, Elworth RAL, Kille B, Kyrillidis A, Nakhleh L, Wolfe CR, Yan Z, Yao V, Treangen TJ. Sapoval N, et al. Among authors: edrisi m. Nat Commun. 2022 Apr 1;13(1):1728. doi: 10.1038/s41467-022-29268-7. Nat Commun. 2022. PMID: 35365602 Free PMC article. Review.

5

Meta-aligner: long-read alignment based on genome statistics.

Nashta-Ali D, Aliyari A, Ahmadian Moghadam A, Edrisi MA, Motahari SA, Hossein Khalaj B. Nashta-Ali D, et al. BMC Bioinformatics. 2017 Feb 23;18(1):126. doi: 10.1186/s12859-017-1518-y. BMC Bioinformatics. 2017. PMID: 28231760 Free PMC article.

6

Copper biosorption from aqueous solutions by sour orange residue.

Khormaei M, Nasernejad B, Edrisi M, Eslamzadeh T. Khormaei M, et al. Among authors: edrisi m. J Hazard Mater. 2007 Oct 22;149(2):269-74. doi: 10.1016/j.jhazmat.2007.03.074. Epub 2007 Mar 30. J Hazard Mater. 2007. PMID: 17493747

7

NestedBD: Bayesian inference of phylogenetic trees from single-cell copy number profiles under a birth-death model.

Liu Y, Edrisi M, Yan Z, A Ogilvie H, Nakhleh L. Liu Y, et al. Among authors: edrisi m. Algorithms Mol Biol. 2024 Apr 29;19(1):18. doi: 10.1186/s13015-024-00264-4. Algorithms Mol Biol. 2024. PMID: 38685065 Free PMC article.

8

Comparative study of synthesis methods and pH-dependent adsorption of methylene blue dye on UiO-66 and NH₂-UiO-66.

Daneshgar H, Sojdeh S, Salehi G, Edrisi M, Bagherzadeh M, Rabiee N. Daneshgar H, et al. Among authors: edrisi m. Chemosphere. 2024 Apr;353:141543. doi: 10.1016/j.chemosphere.2024.141543. Epub 2024 Mar 4. Chemosphere. 2024. PMID: 38447898 Free article.

9

Accurate integration of single-cell DNA and RNA for analyzing intratumor heterogeneity using MaCroDNA.

Edrisi M, Huang X, Ogilvie HA, Nakhleh L. Edrisi M, et al. Nat Commun. 2023 Dec 13;14(1):8262. doi: 10.1038/s41467-023-44014-3. Nat Commun. 2023. PMID: 38092737 Free PMC article.

10

Facile synthesis of FeCeO_x nanoparticles encapsulated carbon nitride catalyst for highly efficient and recyclable synthesis of substituted imidazoles.

Azizi N, Saadat M, Edrisi M. Azizi N, et al. Among authors: edrisi m. Sci Rep. 2023 Oct 14;13(1):17474. doi: 10.1038/s41598-023-44747-7. Sci Rep. 2023. PMID: 37838814 Free PMC article.

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