Nguyen T - Search Results

1

scCAN: single-cell clustering using autoencoder and network fusion.

Tran B, Tran D, Nguyen H, Ro S, Nguyen T. Tran B, et al. Among authors: nguyen t, nguyen h. Sci Rep. 2022 Jun 17;12(1):10267. doi: 10.1038/s41598-022-14218-6. Sci Rep. 2022. PMID: 35715568 Free PMC article.

2

PINSPlus: a tool for tumor subtype discovery in integrated genomic data.

Nguyen H, Shrestha S, Draghici S, Nguyen T. Nguyen H, et al. Among authors: nguyen t. Bioinformatics. 2019 Aug 15;35(16):2843-2846. doi: 10.1093/bioinformatics/bty1049. Bioinformatics. 2019. PMID: 30590381

3

A Comprehensive Survey of Tools and Software for Active Subnetwork Identification.

Nguyen H, Shrestha S, Tran D, Shafi A, Draghici S, Nguyen T. Nguyen H, et al. Among authors: nguyen t. Front Genet. 2019 Mar 5;10:155. doi: 10.3389/fgene.2019.00155. eCollection 2019. Front Genet. 2019. PMID: 30891064 Free PMC article. Review.

4

A Multi-Cohort and Multi-Omics Meta-Analysis Framework to Identify Network-Based Gene Signatures.

Shafi A, Nguyen T, Peyvandipour A, Nguyen H, Draghici S. Shafi A, et al. Among authors: nguyen t, nguyen h. Front Genet. 2019 Mar 19;10:159. doi: 10.3389/fgene.2019.00159. eCollection 2019. Front Genet. 2019. PMID: 30941158 Free PMC article.

5

Functional analysis tools for post-translational modification: a post-translational modification database for analysis of proteins and metabolic pathways.

Cruz ER, Nguyen H, Nguyen T, Wallace IS. Cruz ER, et al. Among authors: nguyen t, nguyen h. Plant J. 2019 Sep;99(5):1003-1013. doi: 10.1111/tpj.14372. Epub 2019 May 31. Plant J. 2019. PMID: 31034103 Free article.

6

R Tutorial: Detection of Differentially Interacting Chromatin Regions From Multiple Hi-C Datasets.

Stansfield JC, Tran D, Nguyen T, Dozmorov MG. Stansfield JC, et al. Among authors: nguyen t. Curr Protoc Bioinformatics. 2019 Jun;66(1):e76. doi: 10.1002/cpbi.76. Epub 2019 May 24. Curr Protoc Bioinformatics. 2019. PMID: 31125519 Free PMC article.

7

NBIA: a network-based integrative analysis framework - applied to pathway analysis.

Nguyen T, Shafi A, Nguyen TM, Schissler AG, Draghici S. Nguyen T, et al. Among authors: nguyen tm. Sci Rep. 2020 Mar 6;10(1):4188. doi: 10.1038/s41598-020-60981-9. Sci Rep. 2020. PMID: 32144346 Free PMC article.

8

A Novel Method for Cancer Subtyping and Risk Prediction Using Consensus Factor Analysis.

Tran D, Nguyen H, Le U, Bebis G, Luu HN, Nguyen T. Tran D, et al. Among authors: nguyen t, nguyen h. Front Oncol. 2020 Jun 24;10:1052. doi: 10.3389/fonc.2020.01052. eCollection 2020. Front Oncol. 2020. PMID: 32714868 Free PMC article.

9

Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data.

Tanevski J, Nguyen T, Truong B, Karaiskos N, Ahsen ME, Zhang X, Shu C, Xu K, Liang X, Hu Y, Pham HV, Xiaomei L, Le TD, Tarca AL, Bhatti G, Romero R, Karathanasis N, Loher P, Chen Y, Ouyang Z, Mao D, Zhang Y, Zand M, Ruan J, Hafemeister C, Qiu P, Tran D, Nguyen T, Gabor A, Yu T, Guinney J, Glaab E, Krause R, Banda P; DREAM SCTC Consortium; Stolovitzky G, Rajewsky N, Saez-Rodriguez J, Meyer P. Tanevski J, et al. Among authors: nguyen t. Life Sci Alliance. 2020 Sep 24;3(11):e202000867. doi: 10.26508/lsa.202000867. Print 2020 Nov. Life Sci Alliance. 2020. PMID: 32972997 Free PMC article.

10

Multi-Omics Analysis Detects Novel Prognostic Subgroups of Breast Cancer.

Nguyen QH, Nguyen H, Nguyen T, Le DH. Nguyen QH, et al. Among authors: nguyen t, nguyen h. Front Genet. 2020 Oct 15;11:574661. doi: 10.3389/fgene.2020.574661. eCollection 2020. Front Genet. 2020. PMID: 33193681 Free PMC article.

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