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Exploring the Effect of Mechanical Anisotropy of Protein Structures in the Unfoldase Mechanism of AAA+ Molecular Machines.
Nanomaterials (Basel). 2022 May 28;12(11):1849. doi: 10.3390/nano12111849.
Nanomaterials (Basel). 2022.
PMID: 35683705
Free PMC article.
Unfolding and Translocation of Knotted Proteins by Clp Biological Nanomachines: Synergistic Contribution of Primary Sequence and Topology Revealed by Molecular Dynamics Simulations.
Fonseka HYY, Javidi A, Oliveira LFL, Micheletti C, Stan G.
Fonseka HYY, et al.
J Phys Chem B. 2021 Jul 15;125(27):7335-7350. doi: 10.1021/acs.jpcb.1c00898. Epub 2021 Jun 10.
J Phys Chem B. 2021.
PMID: 34110163
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Allosteric communication in the gating mechanism for controlled protein degradation by the bacterial ClpP peptidase.
Dayananda A, Dennison TSH, Fonseka HYY, Avestan MS, Wang Q, Tehver R, Stan G.
Dayananda A, et al. Among authors: fonseka hyy.
J Chem Phys. 2023 Mar 28;158(12):125101. doi: 10.1063/5.0139184.
J Chem Phys. 2023.
PMID: 37003718
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