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Beyond HIV outbreaks: protocol, rationale and implementation of a prospective study quantifying the benefit of incorporating viral sequence clustering analysis into routine public health interventions.
Steingrimsson JA, Fulton J, Howison M, Novitsky V, Gillani FS, Bertrand T, Civitarese A, Howe K, Ronquillo G, Lafazia B, Parillo Z, Marak T, Chan PA, Bhattarai L, Dunn C, Bandy U, Scott NA, Hogan JW, Kantor R. Steingrimsson JA, et al. Among authors: howison m. BMJ Open. 2022 Apr 21;12(4):e060184. doi: 10.1136/bmjopen-2021-060184. BMJ Open. 2022. PMID: 35450916 Free PMC article.
Agalma: an automated phylogenomics workflow.
Dunn CW, Howison M, Zapata F. Dunn CW, et al. Among authors: howison m. BMC Bioinformatics. 2013 Nov 19;14:330. doi: 10.1186/1471-2105-14-330. BMC Bioinformatics. 2013. PMID: 24252138 Free PMC article.
An Integrated Perspective on Phylogenetic Workflows.
Guang A, Zapata F, Howison M, Lawrence CE, Dunn CW. Guang A, et al. Among authors: howison m. Trends Ecol Evol. 2016 Feb;31(2):116-126. doi: 10.1016/j.tree.2015.12.007. Epub 2016 Jan 5. Trends Ecol Evol. 2016. PMID: 26775796 Review.
Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing.
Lee ER, Parkin N, Jennings C, Brumme CJ, Enns E, Casadellà M, Howison M, Coetzer M, Avila-Rios S, Capina R, Marinier E, Van Domselaar G, Noguera-Julian M, Kirkby D, Knaggs J, Harrigan R, Quiñones-Mateu M, Paredes R, Kantor R, Sandstrom P, Ji H. Lee ER, et al. Among authors: howison m. Sci Rep. 2020 Jan 31;10(1):1634. doi: 10.1038/s41598-020-58544-z. Sci Rep. 2020. PMID: 32005884 Free PMC article.
Empirical comparison of analytical approaches for identifying molecular HIV-1 clusters.
Novitsky V, Steingrimsson JA, Howison M, Gillani FS, Li Y, Manne A, Fulton J, Spence M, Parillo Z, Marak T, Chan PA, Bertrand T, Bandy U, Alexander-Scott N, Dunn CW, Hogan J, Kantor R. Novitsky V, et al. Among authors: howison m. Sci Rep. 2020 Oct 29;10(1):18547. doi: 10.1038/s41598-020-75560-1. Sci Rep. 2020. PMID: 33122765 Free PMC article.
Revising transcriptome assemblies with phylogenetic information.
Guang A, Howison M, Zapata F, Lawrence C, Dunn CW. Guang A, et al. Among authors: howison m. PLoS One. 2021 Jan 12;16(1):e0244202. doi: 10.1371/journal.pone.0244202. eCollection 2021. PLoS One. 2021. PMID: 33434218 Free PMC article.
33 results