Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

Search Results

1,295 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Results By Year timeline is not available.
Page 1
Beyond HIV outbreaks: protocol, rationale and implementation of a prospective study quantifying the benefit of incorporating viral sequence clustering analysis into routine public health interventions.
Steingrimsson JA, Fulton J, Howison M, Novitsky V, Gillani FS, Bertrand T, Civitarese A, Howe K, Ronquillo G, Lafazia B, Parillo Z, Marak T, Chan PA, Bhattarai L, Dunn C, Bandy U, Scott NA, Hogan JW, Kantor R. Steingrimsson JA, et al. Among authors: dunn c. BMJ Open. 2022 Apr 21;12(4):e060184. doi: 10.1136/bmjopen-2021-060184. BMJ Open. 2022. PMID: 35450916 Free PMC article.
Agalma: an automated phylogenomics workflow.
Dunn CW, Howison M, Zapata F. Dunn CW, et al. BMC Bioinformatics. 2013 Nov 19;14:330. doi: 10.1186/1471-2105-14-330. BMC Bioinformatics. 2013. PMID: 24252138 Free PMC article.
An Integrated Perspective on Phylogenetic Workflows.
Guang A, Zapata F, Howison M, Lawrence CE, Dunn CW. Guang A, et al. Trends Ecol Evol. 2016 Feb;31(2):116-126. doi: 10.1016/j.tree.2015.12.007. Epub 2016 Jan 5. Trends Ecol Evol. 2016. PMID: 26775796 Review.
Empirical comparison of analytical approaches for identifying molecular HIV-1 clusters.
Novitsky V, Steingrimsson JA, Howison M, Gillani FS, Li Y, Manne A, Fulton J, Spence M, Parillo Z, Marak T, Chan PA, Bertrand T, Bandy U, Alexander-Scott N, Dunn CW, Hogan J, Kantor R. Novitsky V, et al. Sci Rep. 2020 Oct 29;10(1):18547. doi: 10.1038/s41598-020-75560-1. Sci Rep. 2020. PMID: 33122765 Free PMC article.
Revising transcriptome assemblies with phylogenetic information.
Guang A, Howison M, Zapata F, Lawrence C, Dunn CW. Guang A, et al. Among authors: dunn cw. PLoS One. 2021 Jan 12;16(1):e0244202. doi: 10.1371/journal.pone.0244202. eCollection 2021. PLoS One. 2021. PMID: 33434218 Free PMC article.
Longitudinal typing of molecular HIV clusters in a statewide epidemic.
Novitsky V, Steingrimsson J, Howison M, Dunn C, Gillani FS, Manne A, Li Y, Spence M, Parillo Z, Fulton J, Marak T, Chan P, Bertrand T, Bandy U, Alexander-Scott N, Hogan J, Kantor R. Novitsky V, et al. Among authors: dunn c. AIDS. 2021 Sep 1;35(11):1711-1722. doi: 10.1097/QAD.0000000000002953. AIDS. 2021. PMID: 34033589 Free PMC article.
Challenges in evaluating the use of viral sequence data to identify HIV transmission networks for public health.
Kantor R, Fulton JP, Steingrimsson J, Novitsky V, Howison M, Gillani F, Li Y, Manne A, Parillo Z, Spence M, Marak T, Chan P, Dunn CW, Bertrand T, Bandy U, Alexander-Scott N, Hogan JW. Kantor R, et al. Stat Commun Infect Dis. 2020 Sep;12(Suppl 1):20190019. doi: 10.1515/scid-2019-0019. Epub 2020 Nov 11. Stat Commun Infect Dis. 2020. PMID: 34733405 Free PMC article.
1,295 results