Shah SA - Search Results

1

Genome binning of viral entities from bulk metagenomics data.

Johansen J, Plichta DR, Nissen JN, Jespersen ML, Shah SA, Deng L, Stokholm J, Bisgaard H, Nielsen DS, Sørensen SJ, Rasmussen S. Johansen J, et al. Among authors: shah sa. Nat Commun. 2022 Feb 18;13(1):965. doi: 10.1038/s41467-022-28581-5. Nat Commun. 2022. PMID: 35181661 Free PMC article.

2

CRISPR-based immune systems of the Sulfolobales: complexity and diversity.

Garrett RA, Shah SA, Vestergaard G, Deng L, Gudbergsdottir S, Kenchappa CS, Erdmann S, She Q. Garrett RA, et al. Among authors: shah sa. Biochem Soc Trans. 2011 Jan;39(1):51-7. doi: 10.1042/BST0390051. Biochem Soc Trans. 2011. PMID: 21265746 Review.

3

A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus.

Deng L, Garrett RA, Shah SA, Peng X, She Q. Deng L, et al. Among authors: shah sa. Mol Microbiol. 2013 Mar;87(5):1088-99. doi: 10.1111/mmi.12152. Epub 2013 Feb 3. Mol Microbiol. 2013. PMID: 23320564 Free article.

4

Meta-analysis of human genome-microbiome association studies: the MiBioGen consortium initiative.

Wang J, Kurilshikov A, Radjabzadeh D, Turpin W, Croitoru K, Bonder MJ, Jackson MA, Medina-Gomez C, Frost F, Homuth G, Rühlemann M, Hughes D, Kim HN; MiBioGen Consortium Initiative; Spector TD, Bell JT, Steves CJ, Timpson N, Franke A, Wijmenga C, Meyer K, Kacprowski T, Franke L, Paterson AD, Raes J, Kraaij R, Zhernakova A. Wang J, et al. Microbiome. 2018 Jun 8;6(1):101. doi: 10.1186/s40168-018-0479-3. Microbiome. 2018. PMID: 29880062 Free PMC article.

5

A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples.

Deng L, Silins R, Castro-Mejía JL, Kot W, Jessen L, Thorsen J, Shah S, Stokholm J, Bisgaard H, Moineau S, Nielsen DS. Deng L, et al. Viruses. 2019 Jul 20;11(7):667. doi: 10.3390/v11070667. Viruses. 2019. PMID: 31330855 Free PMC article.

6

Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids.

Pinilla-Redondo R, Mayo-Muñoz D, Russel J, Garrett RA, Randau L, Sørensen SJ, Shah SA. Pinilla-Redondo R, et al. Among authors: shah sa. Nucleic Acids Res. 2020 Feb 28;48(4):2000-2012. doi: 10.1093/nar/gkz1197. Nucleic Acids Res. 2020. PMID: 31879772 Free PMC article.

7

Virulent coliphages in 1-year-old children fecal samples are fewer, but more infectious than temperate coliphages.

Mathieu A, Dion M, Deng L, Tremblay D, Moncaut E, Shah SA, Stokholm J, Krogfelt KA, Schjørring S, Bisgaard H, Nielsen DS, Moineau S, Petit MA. Mathieu A, et al. Among authors: shah sa. Nat Commun. 2020 Jan 17;11(1):378. doi: 10.1038/s41467-019-14042-z. Nat Commun. 2020. PMID: 31953385 Free PMC article.

8

Prenatal dietary supplements influence the infant airway microbiota in a randomized factorial clinical trial.

Hjelmsø MH, Shah SA, Thorsen J, Rasmussen M, Vestergaard G, Mortensen MS, Brejnrod A, Brix S, Chawes B, Bønnelykke K, Sørensen SJ, Stokholm J, Bisgaard H. Hjelmsø MH, et al. Among authors: shah sa. Nat Commun. 2020 Jan 22;11(1):426. doi: 10.1038/s41467-020-14308-x. Nat Commun. 2020. PMID: 31969566 Free PMC article. Clinical Trial.

9

Ecological succession in the vaginal microbiota during pregnancy and birth.

Rasmussen MA, Thorsen J, Dominguez-Bello MG, Blaser MJ, Mortensen MS, Brejnrod AD, Shah SA, Hjelmsø MH, Lehtimäki J, Trivedi U, Bisgaard H, Sørensen SJ, Stokholm J. Rasmussen MA, et al. Among authors: shah sa. ISME J. 2020 Sep;14(9):2325-2335. doi: 10.1038/s41396-020-0686-3. Epub 2020 Jun 2. ISME J. 2020. PMID: 32488167 Free PMC article.

10

Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma.

Stokholm J, Thorsen J, Blaser MJ, Rasmussen MA, Hjelmsø M, Shah S, Christensen ED, Chawes BL, Bønnelykke K, Brix S, Mortensen MS, Brejnrod A, Vestergaard G, Trivedi U, Sørensen SJ, Bisgaard H. Stokholm J, et al. Sci Transl Med. 2020 Nov 11;12(569):eaax9929. doi: 10.1126/scitranslmed.aax9929. Sci Transl Med. 2020. PMID: 33177184

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