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Genome binning of viral entities from bulk metagenomics data.
Johansen J, Plichta DR, Nissen JN, Jespersen ML, Shah SA, Deng L, Stokholm J, Bisgaard H, Nielsen DS, Sørensen SJ, Rasmussen S. Johansen J, et al. Among authors: sorensen sj. Nat Commun. 2022 Feb 18;13(1):965. doi: 10.1038/s41467-022-28581-5. Nat Commun. 2022. PMID: 35181661 Free PMC article.
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.
Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto JM, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T; MetaHIT Consortium; Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD; MetaHIT Consortium. Nielsen HB, et al. Nat Biotechnol. 2014 Aug;32(8):822-8. doi: 10.1038/nbt.2939. Epub 2014 Jul 6. Nat Biotechnol. 2014. PMID: 24997787
The microbiome of New World vultures.
Roggenbuck M, Bærholm Schnell I, Blom N, Bælum J, Bertelsen MF, Sicheritz-Pontén T, Sørensen SJ, Gilbert MT, Graves GR, Hansen LH. Roggenbuck M, et al. Among authors: sorensen sj. Nat Commun. 2014 Nov 25;5:5498. doi: 10.1038/ncomms6498. Nat Commun. 2014. PMID: 25423494 Free article.
The developing hypopharyngeal microbiota in early life.
Mortensen MS, Brejnrod AD, Roggenbuck M, Abu Al-Soud W, Balle C, Krogfelt KA, Stokholm J, Thorsen J, Waage J, Rasmussen MA, Bisgaard H, Sørensen SJ. Mortensen MS, et al. Among authors: sorensen sj. Microbiome. 2016 Dec 30;4(1):70. doi: 10.1186/s40168-016-0215-9. Microbiome. 2016. PMID: 28038686 Free PMC article.
Metagenomic Analysis of Dairy Bacteriophages: Extraction Method and Pilot Study on Whey Samples Derived from Using Undefined and Defined Mesophilic Starter Cultures.
Muhammed MK, Kot W, Neve H, Mahony J, Castro-Mejía JL, Krych L, Hansen LH, Nielsen DS, Sørensen SJ, Heller KJ, van Sinderen D, Vogensen FK. Muhammed MK, et al. Among authors: sorensen sj. Appl Environ Microbiol. 2017 Sep 15;83(19):e00888-17. doi: 10.1128/AEM.00888-17. Print 2017 Oct 1. Appl Environ Microbiol. 2017. PMID: 28754704 Free PMC article.
342 results