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Clinker: visualizing fusion genes detected in RNA-seq data.
Schmidt BM, Davidson NM, Hawkins ADK, Bartolo R, Majewski IJ, Ekert PG, Oshlack A. Schmidt BM, et al. Gigascience. 2018 Jul 1;7(7):giy079. doi: 10.1093/gigascience/giy079. Gigascience. 2018. PMID: 29982439 Free PMC article.
Targeted therapy and disease monitoring in CNTRL-FGFR1-driven leukaemia.
Brown LM, Bartolo RC, Davidson NM, Schmidt B, Brooks I, Challis J, Petrovic V, Khuong-Quang DA, Mechinaud F, Khaw SL, Majewski IJ, Oshlack A, Ekert PG. Brown LM, et al. Among authors: schmidt b. Pediatr Blood Cancer. 2019 Oct;66(10):e27897. doi: 10.1002/pbc.27897. Epub 2019 Jun 28. Pediatr Blood Cancer. 2019. PMID: 31250523
The application of RNA sequencing for the diagnosis and genomic classification of pediatric acute lymphoblastic leukemia.
Brown LM, Lonsdale A, Zhu A, Davidson NM, Schmidt B, Hawkins A, Wallach E, Martin M, Mechinaud FM, Khaw SL, Bartolo RC, Ludlow LEA, Challis J, Brooks I, Petrovic V, Venn NC, Sutton R, Majewski IJ, Oshlack A, Ekert PG. Brown LM, et al. Among authors: schmidt b. Blood Adv. 2020 Mar 10;4(5):930-942. doi: 10.1182/bloodadvances.2019001008. Blood Adv. 2020. PMID: 32150610 Free PMC article.
Slinker: Visualising novel splicing events in RNA-Seq data.
Schmidt B, Cmero M, Ekert P, Davidson N, Oshlack A. Schmidt B, et al. F1000Res. 2021 Dec 7;10:1255. doi: 10.12688/f1000research.74836.1. eCollection 2021. F1000Res. 2021. PMID: 35035899 Free PMC article.
Enhancer retargeting of CDX2 and UBTF::ATXN7L3 define a subtype of high-risk B-progenitor acute lymphoblastic leukemia.
Kimura S, Montefiori L, Iacobucci I, Zhao Y, Gao Q, Paietta EM, Haferlach C, Laird AD, Mead PE, Gu Z, Stock W, Litzow M, Rowe JM, Luger SM, Hunger SP, Ryland GL, Schmidt B, Ekert PG, Oshlack A, Grimmond SM, Rehn J, Breen J, Yeung D, White DL, Aldoss I, Jabbour EJ, Pui CH, Meggendorfer M, Walter W, Kern W, Haferlach T, Brady S, Zhang J, Roberts KG, Blombery P, Mullighan CG. Kimura S, et al. Among authors: schmidt b. Blood. 2022 Jun 16;139(24):3519-3531. doi: 10.1182/blood.2022015444. Blood. 2022. PMID: 35192684 Free PMC article.
ALLSorts: an RNA-Seq subtype classifier for B-cell acute lymphoblastic leukemia.
Schmidt B, Brown LM, Ryland GL, Lonsdale A, Kosasih HJ, Ludlow LE, Majewski IJ, Blombery P, Ekert PG, Davidson NM, Oshlack A. Schmidt B, et al. Blood Adv. 2022 Jul 26;6(14):4093-4097. doi: 10.1182/bloodadvances.2021005894. Blood Adv. 2022. PMID: 35482550 Free PMC article. No abstract available.
4,132 results