Kuiper M - Search Results

1

ExTRI: Extraction of transcription regulation interactions from literature.

Vazquez M, Krallinger M, Leitner F, Kuiper M, Valencia A, Laegreid A. Vazquez M, et al. Among authors: kuiper m. Biochim Biophys Acta Gene Regul Mech. 2022 Jan;1865(1):194778. doi: 10.1016/j.bbagrm.2021.194778. Epub 2021 Dec 5. Biochim Biophys Acta Gene Regul Mech. 2022. PMID: 34875418 Free article.

2

TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors.

Chawla K, Tripathi S, Thommesen L, Lægreid A, Kuiper M. Chawla K, et al. Among authors: kuiper m. Bioinformatics. 2013 Oct 1;29(19):2519-20. doi: 10.1093/bioinformatics/btt432. Epub 2013 Aug 9. Bioinformatics. 2013. PMID: 23933972

3

Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort.

Tripathi S, Christie KR, Balakrishnan R, Huntley R, Hill DP, Thommesen L, Blake JA, Kuiper M, Lægreid A. Tripathi S, et al. Among authors: kuiper m. Database (Oxford). 2013 Aug 27;2013:bat062. doi: 10.1093/database/bat062. Print 2013. Database (Oxford). 2013. PMID: 23981286 Free PMC article.

4

Finding gene regulatory network candidates using the gene expression knowledge base.

Venkatesan A, Tripathi S, Sanz de Galdeano A, Blondé W, Lægreid A, Mironov V, Kuiper M. Venkatesan A, et al. Among authors: kuiper m. BMC Bioinformatics. 2014 Dec 10;15(1):386. doi: 10.1186/s12859-014-0386-y. BMC Bioinformatics. 2014. PMID: 25490885 Free PMC article.

5

The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms.

Tripathi S, Flobak Å, Chawla K, Baudot A, Bruland T, Thommesen L, Kuiper M, Lægreid A. Tripathi S, et al. Among authors: kuiper m. BMC Syst Biol. 2015 Jul 24;9:40. doi: 10.1186/s12918-015-0181-z. BMC Syst Biol. 2015. PMID: 26205660 Free PMC article.

6

Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.

Flobak Å, Baudot A, Remy E, Thommesen L, Thieffry D, Kuiper M, Lægreid A. Flobak Å, et al. Among authors: kuiper m. PLoS Comput Biol. 2015 Aug 28;11(8):e1004426. doi: 10.1371/journal.pcbi.1004426. eCollection 2015 Aug. PLoS Comput Biol. 2015. PMID: 26317215 Free PMC article.

7

Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.

Tripathi S, Vercruysse S, Chawla K, Christie KR, Blake JA, Huntley RP, Orchard S, Hermjakob H, Thommesen L, Lægreid A, Kuiper M. Tripathi S, et al. Among authors: kuiper m. Database (Oxford). 2016 Jun 5;2016:baw088. doi: 10.1093/database/baw088. Print 2016. Database (Oxford). 2016. PMID: 27270715 Free PMC article.

8

CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination.

Perfetto L, Acencio ML, Bradley G, Cesareni G, Del Toro N, Fazekas D, Hermjakob H, Korcsmaros T, Kuiper M, Lægreid A, Lo Surdo P, Lovering RC, Orchard S, Porras P, Thomas PD, Touré V, Zobolas J, Licata L. Perfetto L, et al. Among authors: kuiper m. Bioinformatics. 2019 Oct 1;35(19):3779-3785. doi: 10.1093/bioinformatics/btz132. Bioinformatics. 2019. PMID: 30793173 Free PMC article.

9

Silencing trust: confidence and familiarity in re-engineering knowledge infrastructures.

Nydal R, Bennett G, Kuiper M, Lægreid A. Nydal R, et al. Among authors: kuiper m. Med Health Care Philos. 2020 Sep;23(3):471-484. doi: 10.1007/s11019-020-09957-0. Med Health Care Philos. 2020. PMID: 32468194 Free PMC article.

10

The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).

Touré V, Vercruysse S, Acencio ML, Lovering RC, Orchard S, Bradley G, Casals-Casas C, Chaouiya C, Del-Toro N, Flobak Å, Gaudet P, Hermjakob H, Hoyt CT, Licata L, Lægreid A, Mungall CJ, Niknejad A, Panni S, Perfetto L, Porras P, Pratt D, Saez-Rodriguez J, Thieffry D, Thomas PD, Türei D, Kuiper M. Touré V, et al. Among authors: kuiper m. Bioinformatics. 2021 Apr 5;36(24):5712-5718. doi: 10.1093/bioinformatics/btaa622. Bioinformatics. 2021. PMID: 32637990 Free PMC article.

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