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Free Energy Landscapes from SARS-CoV-2 Spike Glycoprotein Simulations Suggest that RBD Opening Can Be Modulated via Interactions in an Allosteric Pocket.
Fallon L, Belfon KAA, Raguette L, Wang Y, Stepanenko D, Cuomo A, Guerra J, Budhan S, Varghese S, Corbo CP, Rizzo RC, Simmerling C. Fallon L, et al. Among authors: stepanenko d. J Am Chem Soc. 2021 Aug 4;143(30):11349-11360. doi: 10.1021/jacs.1c00556. Epub 2021 Jul 16. J Am Chem Soc. 2021. PMID: 34270232 Free PMC article.
MHC-Fine: Fine-tuned AlphaFold for Precise MHC-Peptide Complex Prediction.
Glukhov E, Kalitin D, Stepanenko D, Zhu Y, Nguyen T, Jones G, Patsahan T, Simmerling C, Mitchell JC, Vajda S, Dill KA, Padhorny D, Kozakov D. Glukhov E, et al. Among authors: stepanenko d. Biophys J. 2024 May 15:S0006-3495(24)00325-4. doi: 10.1016/j.bpj.2024.05.011. Online ahead of print. Biophys J. 2024. PMID: 38751115
MHC-Fine: Fine-tuned AlphaFold for Precise MHC-Peptide Complex Prediction.
Glukhov E, Kalitin D, Stepanenko D, Zhu Y, Nguyen T, Jones G, Simmerling C, Mitchell JC, Vajda S, Dill KA, Padhorny D, Kozakov D. Glukhov E, et al. Among authors: stepanenko d. bioRxiv [Preprint]. 2023 Dec 14:2023.11.29.569310. doi: 10.1101/2023.11.29.569310. bioRxiv. 2023. PMID: 38077000 Free PMC article. Updated. Preprint.
Naturally safe: Cellular noise for document security.
Pavlović D, Rabasović MD, Krmpot AJ, Lazović V, Čurčić S, Stojanović DV, Jelenković B, Zhang W, Zhang D, Vukmirović N, Stepanenko D, Kolarić B, Pantelić DV. Pavlović D, et al. Among authors: stepanenko d. J Biophotonics. 2019 Dec;12(12):e201900218. doi: 10.1002/jbio.201900218. Epub 2019 Oct 1. J Biophotonics. 2019. PMID: 31452335
Spin-electric coupling in molecular magnets.
Trif M, Troiani F, Stepanenko D, Loss D. Trif M, et al. Among authors: stepanenko d. Phys Rev Lett. 2008 Nov 21;101(21):217201. doi: 10.1103/PhysRevLett.101.217201. Epub 2008 Nov 20. Phys Rev Lett. 2008. PMID: 19113446
13 results