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COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.
Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, Singh V, Aghamiri SS, Acencio ML, Glaab E, Ruepp A, Fobo G, Montrone C, Brauner B, Frishman G, Monraz Gómez LC, Somers J, Hoch M, Kumar Gupta S, Scheel J, Borlinghaus H, Czauderna T, Schreiber F, Montagud A, Ponce de Leon M, Funahashi A, Hiki Y, Hiroi N, Yamada TG, Dräger A, Renz A, Naveez M, Bocskei Z, Messina F, Börnigen D, Fergusson L, Conti M, Rameil M, Nakonecnij V, Vanhoefer J, Schmiester L, Wang M, Ackerman EE, Shoemaker JE, Zucker J, Oxford K, Teuton J, Kocakaya E, Summak GY, Hanspers K, Kutmon M, Coort S, Eijssen L, Ehrhart F, Rex DAB, Slenter D, Martens M, Pham N, Haw R, Jassal B, Matthews L, Orlic-Milacic M, Senff Ribeiro A, Rothfels K, Shamovsky V, Stephan R, Sevilla C, Varusai T, Ravel JM, Fraser R, Ortseifen V, Marchesi S, Gawron P, Smula E, Heirendt L, Satagopam V, Wu G, Riutta A, Golebiewski M, Owen S, Goble C, Hu X, Overall RW, Maier D, Bauch A, Gyori BM, Bachman JA, Vega C, Grouès V, Vazquez M, Porras P, Licata L, Iannuccelli M, Sacco F, Nesterova A, Yuryev A, de Waard A, Turei D, Luna A, Babur O, Soliman S, Valdeolivas A, Esteban-Medina M, Peña-Chilet M, Rian K, Helikar T, Puniya… See abstract for full author list ➔ Ostaszewski M, et al. Among authors: iannuccelli m. Mol Syst Biol. 2021 Oct;17(10):e10387. doi: 10.15252/msb.202110387. Mol Syst Biol. 2021. PMID: 34664389 Free PMC article.
MINT, the molecular interaction database: 2012 update.
Licata L, Briganti L, Peluso D, Perfetto L, Iannuccelli M, Galeota E, Sacco F, Palma A, Nardozza AP, Santonico E, Castagnoli L, Cesareni G. Licata L, et al. Among authors: iannuccelli m. Nucleic Acids Res. 2012 Jan;40(Database issue):D857-61. doi: 10.1093/nar/gkr930. Epub 2011 Nov 16. Nucleic Acids Res. 2012. PMID: 22096227 Free PMC article.
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A. Krallinger M, et al. Among authors: iannuccelli m. BMC Bioinformatics. 2011 Oct 3;12 Suppl 8(Suppl 8):S3. doi: 10.1186/1471-2105-12-S8-S3. BMC Bioinformatics. 2011. PMID: 22151929 Free PMC article.
The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.
Orchard S, Ammari M, Aranda B, Breuza L, Briganti L, Broackes-Carter F, Campbell NH, Chavali G, Chen C, del-Toro N, Duesbury M, Dumousseau M, Galeota E, Hinz U, Iannuccelli M, Jagannathan S, Jimenez R, Khadake J, Lagreid A, Licata L, Lovering RC, Meldal B, Melidoni AN, Milagros M, Peluso D, Perfetto L, Porras P, Raghunath A, Ricard-Blum S, Roechert B, Stutz A, Tognolli M, van Roey K, Cesareni G, Hermjakob H. Orchard S, et al. Among authors: iannuccelli m. Nucleic Acids Res. 2014 Jan;42(Database issue):D358-63. doi: 10.1093/nar/gkt1115. Epub 2013 Nov 13. Nucleic Acids Res. 2014. PMID: 24234451 Free PMC article.
SIGNOR: a database of causal relationships between biological entities.
Perfetto L, Briganti L, Calderone A, Cerquone Perpetuini A, Iannuccelli M, Langone F, Licata L, Marinkovic M, Mattioni A, Pavlidou T, Peluso D, Petrilli LL, Pirrò S, Posca D, Santonico E, Silvestri A, Spada F, Castagnoli L, Cesareni G. Perfetto L, et al. Among authors: iannuccelli m. Nucleic Acids Res. 2016 Jan 4;44(D1):D548-54. doi: 10.1093/nar/gkv1048. Epub 2015 Oct 13. Nucleic Acids Res. 2016. PMID: 26467481 Free PMC article.
DISNOR: a disease network open resource.
Lo Surdo P, Calderone A, Iannuccelli M, Licata L, Peluso D, Castagnoli L, Cesareni G, Perfetto L. Lo Surdo P, et al. Among authors: iannuccelli m. Nucleic Acids Res. 2018 Jan 4;46(D1):D527-D534. doi: 10.1093/nar/gkx876. Nucleic Acids Res. 2018. PMID: 29036667 Free PMC article.
CancerGeneNet: linking driver genes to cancer hallmarks.
Iannuccelli M, Micarelli E, Surdo PL, Palma A, Perfetto L, Rozzo I, Castagnoli L, Licata L, Cesareni G. Iannuccelli M, et al. Nucleic Acids Res. 2020 Jan 8;48(D1):D416-D421. doi: 10.1093/nar/gkz871. Nucleic Acids Res. 2020. PMID: 31598703 Free PMC article.
SIGNOR 2.0, the SIGnaling Network Open Resource 2.0: 2019 update.
Licata L, Lo Surdo P, Iannuccelli M, Palma A, Micarelli E, Perfetto L, Peluso D, Calderone A, Castagnoli L, Cesareni G. Licata L, et al. Among authors: iannuccelli m. Nucleic Acids Res. 2020 Jan 8;48(D1):D504-D510. doi: 10.1093/nar/gkz949. Nucleic Acids Res. 2020. PMID: 31665520 Free PMC article.
Using the MINT Database to Search Protein Interactions.
Calderone A, Iannuccelli M, Peluso D, Licata L. Calderone A, et al. Among authors: iannuccelli m. Curr Protoc Bioinformatics. 2020 Mar;69(1):e93. doi: 10.1002/cpbi.93. Curr Protoc Bioinformatics. 2020. PMID: 31945268
The IMEx Coronavirus interactome: an evolving map of Coronaviridae-Host molecular interactions.
Perfetto L, Pastrello C, Del-Toro N, Duesbury M, Iannuccelli M, Kotlyar M, Licata L, Meldal B, Panneerselvam K, Panni S, Rahimzadeh N, Ricard-Blum S, Salwinski L, Shrivastava A, Cesareni G, Pellegrini M, Orchard S, Jurisica I, Hermjakob HH, Porras P. Perfetto L, et al. Among authors: iannuccelli m. bioRxiv [Preprint]. 2020 Jun 16:2020.06.16.153817. doi: 10.1101/2020.06.16.153817. bioRxiv. 2020. PMID: 32587962 Free PMC article. Updated. Preprint.
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