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Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment.
Lensink MF, Brysbaert G, Mauri T, Nadzirin N, Velankar S, Chaleil RAG, Clarence T, Bates PA, Kong R, Liu B, Yang G, Liu M, Shi H, Lu X, Chang S, Roy RS, Quadir F, Liu J, Cheng J, Antoniak A, Czaplewski C, Giełdoń A, Kogut M, Lipska AG, Liwo A, Lubecka EA, Maszota-Zieleniak M, Sieradzan AK, Ślusarz R, Wesołowski PA, Zięba K, Del Carpio Muñoz CA, Ichiishi E, Harmalkar A, Gray JJ, Bonvin AMJJ, Ambrosetti F, Vargas Honorato R, Jandova Z, Jiménez-García B, Koukos PI, Van Keulen S, Van Noort CW, Réau M, Roel-Touris J, Kotelnikov S, Padhorny D, Porter KA, Alekseenko A, Ignatov M, Desta I, Ashizawa R, Sun Z, Ghani U, Hashemi N, Vajda S, Kozakov D, Rosell M, Rodríguez-Lumbreras LA, Fernandez-Recio J, Karczynska A, Grudinin S, Yan Y, Li H, Lin P, Huang SY, Christoffer C, Terashi G, Verburgt J, Sarkar D, Aderinwale T, Wang X, Kihara D, Nakamura T, Hanazono Y, Gowthaman R, Guest JD, Yin R, Taherzadeh G, Pierce BG, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Sun Y, Zhu S, Shen Y, Park T, Woo H, Yang J, Kwon S, Won J, Seok C, Kiyota Y, Kobayashi S, Harada Y, Takeda-Shitaka M, Kundrotas PJ, Singh A, Vakser IA, Dapkūnas J, Olechnovič K, Venclovas Č, Duan R, Qiu L, Xu X, Zhang S, Zou X,… See abstract for full author list ➔ Lensink MF, et al. Among authors: singh a. Proteins. 2021 Dec;89(12):1800-1823. doi: 10.1002/prot.26222. Epub 2021 Sep 13. Proteins. 2021. PMID: 34453465 Free PMC article.
Application of docking methodologies to modeled proteins.
Singh A, Dauzhenka T, Kundrotas PJ, Sternberg MJE, Vakser IA. Singh A, et al. Proteins. 2020 Sep;88(9):1180-1188. doi: 10.1002/prot.25889. Epub 2020 Mar 20. Proteins. 2020. PMID: 32170770 Free PMC article.
Dockground resource for protein recognition studies.
Collins KW, Copeland MM, Kotthoff I, Singh A, Kundrotas PJ, Vakser IA. Collins KW, et al. Among authors: singh a. Protein Sci. 2022 Dec;31(12):e4481. doi: 10.1002/pro.4481. Protein Sci. 2022. PMID: 36281025 Free PMC article.
[No title available]
[No authors listed] [No authors listed] PMID: 36784471
GRAMM Web Server for Protein Docking.
Singh A, Copeland MM, Kundrotas PJ, Vakser IA. Singh A, et al. Methods Mol Biol. 2024;2714:101-112. doi: 10.1007/978-1-0716-3441-7_5. Methods Mol Biol. 2024. PMID: 37676594
Prevalence and Correlates of Vitamin D Deficiency among Adult Population in Urban and Rural Areas of the National Capital Region of Delhi, India.
Praveen PA, Singh A, Lakshmy R, Amarchand R, Berry P, Krishnan A, Prabhakaran D, Tandon N, Roy A. Praveen PA, et al. Among authors: singh a. WHO South East Asia J Public Health. 2023 Jul 1;12(2):104-109. doi: 10.4103/WHO-SEAJPH.WHO-SEAJPH_113_22. Epub 2024 Jan 19. WHO South East Asia J Public Health. 2023. PMID: 38848530
Comparison of biosimilar filgrastim and originator filgrastim for peripheral blood stem cell mobilization for allogeneic hematopoietic stem cell transplantation.
Shahzad M, Amin MK, Bellman P, Al-Ramahi J, Noor J, Vyas A, Mahmoudjafari Z, McGuirk M, DeJarnette S, Ahmed N, Abdallah AO, Shune L, Singh AK, McGuirk JP, Abhyankar S, Mushtaq MU. Shahzad M, et al. Among authors: singh ak. Transfusion. 2024 Jun 7. doi: 10.1111/trf.17909. Online ahead of print. Transfusion. 2024. PMID: 38847196
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