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Microbiome signatures of progression toward celiac disease onset in at-risk children in a longitudinal prospective cohort study.
Proc Natl Acad Sci U S A. 2021 Jul 20;118(29):e2020322118. doi: 10.1073/pnas.2020322118.
Proc Natl Acad Sci U S A. 2021.
PMID: 34253606
Free PMC article.
Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease.
Leonard MM, Karathia H, Pujolassos M, Troisi J, Valitutti F, Subramanian P, Camhi S, Kenyon V, Colucci A, Serena G, Cucchiara S, Montuori M, Malamisura B, Francavilla R, Elli L, Fanelli B, Colwell R, Hasan N, Zomorrodi AR, Fasano A; CD-GEMM Team.
Leonard MM, et al. Among authors: pujolassos m.
Microbiome. 2020 Sep 11;8(1):130. doi: 10.1186/s40168-020-00906-w.
Microbiome. 2020.
PMID: 32917289
Free PMC article.
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Microbiota and Metabolomic Patterns in the Breast Milk of Subjects with Celiac Disease on a Gluten-Free Diet.
Olshan KL, Zomorrodi AR, Pujolassos M, Troisi J, Khan N, Fanelli B, Kenyon V, Fasano A, Leonard MM.
Olshan KL, et al. Among authors: pujolassos m.
Nutrients. 2021 Jun 29;13(7):2243. doi: 10.3390/nu13072243.
Nutrients. 2021.
PMID: 34210038
Free PMC article.
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Antibiotic-associated dysbiosis affects the ability of the gut microbiota to control intestinal inflammation upon fecal microbiota transplantation in experimental colitis models.
Strati F, Pujolassos M, Burrello C, Giuffrè MR, Lattanzi G, Caprioli F, Troisi J, Facciotti F.
Strati F, et al. Among authors: pujolassos m.
Microbiome. 2021 Feb 6;9(1):39. doi: 10.1186/s40168-020-00991-x.
Microbiome. 2021.
PMID: 33549144
Free PMC article.
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Microbiome compositional data analysis for survival studies.
Pujolassos M, Susín A, Calle ML.
Pujolassos M, et al.
NAR Genom Bioinform. 2024 Apr 25;6(2):lqae038. doi: 10.1093/nargab/lqae038. eCollection 2024 Jun.
NAR Genom Bioinform. 2024.
PMID: 38666212
Free PMC article.
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A toolbox of machine learning software to support microbiome analysis.
Marcos-Zambrano LJ, López-Molina VM, Bakir-Gungor B, Frohme M, Karaduzovic-Hadziabdic K, Klammsteiner T, Ibrahimi E, Lahti L, Loncar-Turukalo T, Dhamo X, Simeon A, Nechyporenko A, Pio G, Przymus P, Sampri A, Trajkovik V, Lacruz-Pleguezuelos B, Aasmets O, Araujo R, Anagnostopoulos I, Aydemir Ö, Berland M, Calle ML, Ceci M, Duman H, Gündoğdu A, Havulinna AS, Kaka Bra KHN, Kalluci E, Karav S, Lode D, Lopes MB, May P, Nap B, Nedyalkova M, Paciência I, Pasic L, Pujolassos M, Shigdel R, Susín A, Thiele I, Truică CO, Wilmes P, Yilmaz E, Yousef M, Claesson MJ, Truu J, Carrillo de Santa Pau E.
Marcos-Zambrano LJ, et al. Among authors: pujolassos m.
Front Microbiol. 2023 Nov 22;14:1250806. doi: 10.3389/fmicb.2023.1250806. eCollection 2023.
Front Microbiol. 2023.
PMID: 38075858
Free PMC article.
Review.
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coda4microbiome: compositional data analysis for microbiome cross-sectional and longitudinal studies.
Calle ML, Pujolassos M, Susin A.
Calle ML, et al. Among authors: pujolassos m.
BMC Bioinformatics. 2023 Mar 6;24(1):82. doi: 10.1186/s12859-023-05205-3.
BMC Bioinformatics. 2023.
PMID: 36879227
Free PMC article.
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