Theobald DL - Search Results

1

A thermodynamic model of protein structure evolution explains empirical amino acid substitution matrices.

Norn C, André I, Theobald DL. Norn C, et al. Among authors: theobald dl. Protein Sci. 2021 Oct;30(10):2057-2068. doi: 10.1002/pro.4155. Epub 2021 Jul 30. Protein Sci. 2021. PMID: 34218472 Free PMC article.

2

Gradual neofunctionalization in the convergent evolution of trichomonad lactate and malate dehydrogenases.

Steindel PA, Chen EH, Wirth JD, Theobald DL. Steindel PA, et al. Among authors: theobald dl. Protein Sci. 2016 Jul;25(7):1319-31. doi: 10.1002/pro.2904. Epub 2016 Mar 24. Protein Sci. 2016. PMID: 26889885 Free PMC article.

3

Presenilin adopts the ClC channel fold.

Theobald DL. Theobald DL. Protein Sci. 2016 Jul;25(7):1363-5. doi: 10.1002/pro.2919. Epub 2016 Mar 23. Protein Sci. 2016. PMID: 26971579 Free PMC article.

4

On universal common ancestry, sequence similarity, and phylogenetic structure: the sins of P-values and the virtues of Bayesian evidence.

Theobald DL. Theobald DL. Biol Direct. 2011 Nov 24;6(1):60. doi: 10.1186/1745-6150-6-60. Biol Direct. 2011. PMID: 22114984 Free PMC article.

5

Relocating the active-site lysine in rhodopsin and implications for evolution of retinylidene proteins.

Devine EL, Oprian DD, Theobald DL. Devine EL, et al. Among authors: theobald dl. Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13351-5. doi: 10.1073/pnas.1306826110. Epub 2013 Jul 31. Proc Natl Acad Sci U S A. 2013. PMID: 23904486 Free PMC article.

6

An empirical test of convergent evolution in rhodopsins.

Mackin KA, Roy RA, Theobald DL. Mackin KA, et al. Among authors: theobald dl. Mol Biol Evol. 2014 Jan;31(1):85-95. doi: 10.1093/molbev/mst171. Epub 2013 Sep 27. Mol Biol Evol. 2014. PMID: 24077848 Free PMC article.

7

An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases.

Boucher JI, Jacobowitz JR, Beckett BC, Classen S, Theobald DL. Boucher JI, et al. Among authors: theobald dl. Elife. 2014 Jun 25;3:e02304. doi: 10.7554/eLife.02304. Elife. 2014. PMID: 24966208 Free PMC article.

8

Kinase dynamics. Using ancient protein kinases to unravel a modern cancer drug's mechanism.

Wilson C, Agafonov RV, Hoemberger M, Kutter S, Zorba A, Halpin J, Buosi V, Otten R, Waterman D, Theobald DL, Kern D. Wilson C, et al. Among authors: theobald dl. Science. 2015 Feb 20;347(6224):882-6. doi: 10.1126/science.aaa1823. Science. 2015. PMID: 25700521 Free PMC article.

9

Relocating the Active-Site Lysine in Rhodopsin: 2. Evolutionary Intermediates.

Devine EL, Theobald DL, Oprian DD. Devine EL, et al. Among authors: theobald dl. Biochemistry. 2016 Aug 30;55(34):4864-70. doi: 10.1021/acs.biochem.6b00478. Epub 2016 Aug 12. Biochemistry. 2016. PMID: 27486845 Free PMC article.

10

Evolutionary drivers of thermoadaptation in enzyme catalysis.

Nguyen V, Wilson C, Hoemberger M, Stiller JB, Agafonov RV, Kutter S, English J, Theobald DL, Kern D. Nguyen V, et al. Among authors: theobald dl. Science. 2017 Jan 20;355(6322):289-294. doi: 10.1126/science.aah3717. Epub 2016 Dec 22. Science. 2017. PMID: 28008087 Free PMC article.

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