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The expression of long non-coding RNAs is associated with H3Ac and H3K4me2 changes regulated by the HDA6-LDL1/2 histone modification complex in Arabidopsis.
NAR Genom Bioinform. 2020 Sep 21;2(3):lqaa066. doi: 10.1093/nargab/lqaa066. eCollection 2020 Sep.
NAR Genom Bioinform. 2020.
PMID: 33575615
Free PMC article.
Epigenomic regulation of OTU5 in Arabidopsis thaliana.
Hsieh JA, Yen MR, Chen PY.
Hsieh JA, et al.
Genomics. 2020 Sep;112(5):3549-3559. doi: 10.1016/j.ygeno.2020.04.006. Epub 2020 Apr 13.
Genomics. 2020.
PMID: 32298708
Free article.
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Mycena genomes resolve the evolution of fungal bioluminescence.
Ke HM, Lee HH, Lin CI, Liu YC, Lu MR, Hsieh JA, Chang CC, Wu PH, Lu MJ, Li JY, Shang G, Lu RJ, Nagy LG, Chen PY, Kao HW, Tsai IJ.
Ke HM, et al. Among authors: hsieh ja.
Proc Natl Acad Sci U S A. 2020 Dec 8;117(49):31267-31277. doi: 10.1073/pnas.2010761117. Epub 2020 Nov 23.
Proc Natl Acad Sci U S A. 2020.
PMID: 33229585
Free PMC article.
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HISTONE DEACETYLASE 15 and MOS4-associated complex subunits 3A/3B coregulate intron retention of ABA-responsive genes.
Tu YT, Chen CY, Huang YS, Chang CH, Yen MR, Hsieh JA, Chen PY, Wu K.
Tu YT, et al. Among authors: hsieh ja.
Plant Physiol. 2022 Aug 29;190(1):882-897. doi: 10.1093/plphys/kiac271.
Plant Physiol. 2022.
PMID: 35670741
Free PMC article.
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Rice transformation treatments leave specific epigenome changes beyond tissue culture.
Hsieh JA, Chang P, Kuang LY, Hsing YC, Chen PY.
Hsieh JA, et al.
Plant Physiol. 2023 Sep 22;193(2):1297-1312. doi: 10.1093/plphys/kiad382.
Plant Physiol. 2023.
PMID: 37394940
Free PMC article.
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Merit of integrating in situ transcriptomics and anatomical information for cell annotation and lineage construction in single-cell analyses of Populus.
Chen YL, Hsieh JA, Kuo SC, Kao CT, Tung CC, Yu JH, Chang TH, Ku C, Xie J, Zhang D, Li Q, Lin YJ.
Chen YL, et al. Among authors: hsieh ja.
Genome Biol. 2024 Apr 3;25(1):85. doi: 10.1186/s13059-024-03227-5.
Genome Biol. 2024.
PMID: 38570851
Free PMC article.
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