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FIREcaller: Detecting frequently interacting regions from Hi-C data.
Crowley C, Yang Y, Qiu Y, Hu B, Abnousi A, Lipiński J, Plewczyński D, Wu D, Won H, Ren B, Hu M, Li Y. Crowley C, et al. Among authors: ren b. Comput Struct Biotechnol J. 2020 Dec 29;19:355-362. doi: 10.1016/j.csbj.2020.12.026. eCollection 2021. Comput Struct Biotechnol J. 2020. PMID: 33489005 Free PMC article.
HiCNorm: removing biases in Hi-C data via Poisson regression.
Hu M, Deng K, Selvaraj S, Qin Z, Ren B, Liu JS. Hu M, et al. Among authors: ren b. Bioinformatics. 2012 Dec 1;28(23):3131-3. doi: 10.1093/bioinformatics/bts570. Epub 2012 Sep 27. Bioinformatics. 2012. PMID: 23023982 Free PMC article.
Integrative analysis of haplotype-resolved epigenomes across human tissues.
Leung D, Jung I, Rajagopal N, Schmitt A, Selvaraj S, Lee AY, Yen CA, Lin S, Lin Y, Qiu Y, Xie W, Yue F, Hariharan M, Ray P, Kuan S, Edsall L, Yang H, Chi NC, Zhang MQ, Ecker JR, Ren B. Leung D, et al. Among authors: ren b. Nature. 2015 Feb 19;518(7539):350-354. doi: 10.1038/nature14217. Nature. 2015. PMID: 25693566 Free PMC article.
Genome-wide mapping and analysis of chromosome architecture.
Schmitt AD, Hu M, Ren B. Schmitt AD, et al. Among authors: ren b. Nat Rev Mol Cell Biol. 2016 Dec;17(12):743-755. doi: 10.1038/nrm.2016.104. Epub 2016 Sep 1. Nat Rev Mol Cell Biol. 2016. PMID: 27580841 Free PMC article. Review.
HUGIn: Hi-C Unifying Genomic Interrogator.
Martin JS, Xu Z, Reiner AP, Mohlke KL, Sullivan P, Ren B, Hu M, Li Y. Martin JS, et al. Among authors: ren b. Bioinformatics. 2017 Dec 1;33(23):3793-3795. doi: 10.1093/bioinformatics/btx359. Bioinformatics. 2017. PMID: 28582503 Free PMC article.
2,603 results