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Influenza outbreaks.
Wikramaratna PS, Gupta S. Wikramaratna PS, et al. Among authors: gupta s. Cell Microbiol. 2009 Jul;11(7):1016-24. doi: 10.1111/j.1462-5822.2009.01320.x. Epub 2009 Apr 6. Cell Microbiol. 2009. PMID: 19374656 Review.
The antigenic evolution of influenza: drift or thrift?
Wikramaratna PS, Sandeman M, Recker M, Gupta S. Wikramaratna PS, et al. Among authors: gupta s. Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120200. doi: 10.1098/rstb.2012.0200. Print 2013 Mar 19. Philos Trans R Soc Lond B Biol Sci. 2013. PMID: 23382423 Free PMC article.
Five challenges in modelling interacting strain dynamics.
Wikramaratna PS, Kucharski A, Gupta S, Andreasen V, McLean AR, Gog JR. Wikramaratna PS, et al. Among authors: gupta s. Epidemics. 2015 Mar;10:31-4. doi: 10.1016/j.epidem.2014.07.005. Epub 2014 Oct 7. Epidemics. 2015. PMID: 25843379 Free article.
MANTIS: an R package that simulates multilocus models of pathogen evolution.
Lourenço J, Wikramaratna PS, Gupta S. Lourenço J, et al. Among authors: gupta s. BMC Bioinformatics. 2015 May 28;16:176. doi: 10.1186/s12859-015-0598-9. BMC Bioinformatics. 2015. PMID: 26017358 Free PMC article.
MANTIS can simulate and analyse epidemiological time-series generated under the biological assumptions of the strain theory of host-pathogen systems by Gupta et al. CONCLUSIONS: MANTIS wraps a C/C++ ordinary-differential equations system and Runge-Kutta solver into a set o …
MANTIS can simulate and analyse epidemiological time-series generated under the biological assumptions of the strain theory of host-pathogen …
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