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PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins.
Lazar T, Martínez-Pérez E, Quaglia F, Hatos A, Chemes LB, Iserte JA, Méndez NA, Garrone NA, Saldaño TE, Marchetti J, Rueda AJV, Bernadó P, Blackledge M, Cordeiro TN, Fagerberg E, Forman-Kay JD, Fornasari MS, Gibson TJ, Gomes GW, Gradinaru CC, Head-Gordon T, Jensen MR, Lemke EA, Longhi S, Marino-Buslje C, Minervini G, Mittag T, Monzon AM, Pappu RV, Parisi G, Ricard-Blum S, Ruff KM, Salladini E, Skepö M, Svergun D, Vallet SD, Varadi M, Tompa P, Tosatto SCE, Piovesan D. Lazar T, et al. Among authors: saldano te. Nucleic Acids Res. 2021 Jan 8;49(D1):D404-D411. doi: 10.1093/nar/gkaa1021. Nucleic Acids Res. 2021. PMID: 33305318 Free PMC article.
Conformational diversity analysis reveals three functional mechanisms in proteins.
Monzon AM, Zea DJ, Fornasari MS, Saldaño TE, Fernandez-Alberti S, Tosatto SC, Parisi G. Monzon AM, et al. Among authors: saldano te. PLoS Comput Biol. 2017 Feb 13;13(2):e1005398. doi: 10.1371/journal.pcbi.1005398. eCollection 2017 Feb. PLoS Comput Biol. 2017. PMID: 28192432 Free PMC article.
[No title available]
[No authors listed] [No authors listed] PMID: 35380621
Impact of protein conformational diversity on AlphaFold predictions.
Saldaño T, Escobedo N, Marchetti J, Zea DJ, Mac Donagh J, Velez Rueda AJ, Gonik E, García Melani A, Novomisky Nechcoff J, Salas MN, Peters T, Demitroff N, Fernandez Alberti S, Palopoli N, Fornasari MS, Parisi G. Saldaño T, et al. Bioinformatics. 2022 May 13;38(10):2742-2748. doi: 10.1093/bioinformatics/btac202. Bioinformatics. 2022. PMID: 35561203
Expanding the repertoire of human tandem repeat RNA-binding proteins.
Ormazábal A, Carletti MS, Saldaño TE, Gonzalez Buitron M, Marchetti J, Palopoli N, Bateman A. Ormazábal A, et al. Among authors: saldano te. PLoS One. 2023 Sep 20;18(9):e0290890. doi: 10.1371/journal.pone.0290890. eCollection 2023. PLoS One. 2023. PMID: 37729217 Free PMC article.
11 results