de Ridder D - Search Results

1

Network Analysis Prioritizes DEWAX and ICE1 as the Candidate Genes for Major eQTL Hotspots in Seed Germination of Arabidopsis thaliana.

Hartanto M, Joosen RVL, Snoek BL, Willems LAJ, Sterken MG, de Ridder D, Hilhorst HWM, Ligterink W, Nijveen H. Hartanto M, et al. Among authors: de ridder d. G3 (Bethesda). 2020 Nov 5;10(11):4215-4226. doi: 10.1534/g3.120.401477. G3 (Bethesda). 2020. PMID: 32963085 Free PMC article.

2

Beyond genomic variation--comparison and functional annotation of three Brassica rapa genomes: a turnip, a rapid cycling and a Chinese cabbage.

Lin K, Zhang N, Severing EI, Nijveen H, Cheng F, Visser RG, Wang X, de Ridder D, Bonnema G. Lin K, et al. Among authors: de ridder d. BMC Genomics. 2014 Mar 31;15(1):250. doi: 10.1186/1471-2164-15-250. BMC Genomics. 2014. PMID: 24684742 Free PMC article.

3

CyLineUp: A Cytoscape app for visualizing data in network small multiples.

Costa MCD, Slijkhuis T, Ligterink W, Hilhorst HWM, de Ridder D, Nijveen H. Costa MCD, et al. Among authors: de ridder d. F1000Res. 2016 Apr 11;5:635. doi: 10.12688/f1000research.8402.1. eCollection 2016. F1000Res. 2016. PMID: 27347378 Free PMC article.

4

The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.

Santuari L, Sanchez-Perez GF, Luijten M, Rutjens B, Terpstra I, Berke L, Gorte M, Prasad K, Bao D, Timmermans-Hereijgers JL, Maeo K, Nakamura K, Shimotohno A, Pencik A, Novak O, Ljung K, van Heesch S, de Bruijn E, Cuppen E, Willemsen V, Mähönen AP, Lukowitz W, Snel B, de Ridder D, Scheres B, Heidstra R. Santuari L, et al. Among authors: de ridder d, de bruijn e. Plant Cell. 2016 Dec;28(12):2937-2951. doi: 10.1105/tpc.16.00656. Epub 2016 Dec 5. Plant Cell. 2016. PMID: 27920338 Free PMC article.

5

AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana.

Nijveen H, Ligterink W, Keurentjes JJ, Loudet O, Long J, Sterken MG, Prins P, Hilhorst HW, de Ridder D, Kammenga JE, Snoek BL. Nijveen H, et al. Among authors: de ridder d. Plant J. 2017 Mar;89(6):1225-1235. doi: 10.1111/tpj.13457. Epub 2017 Feb 13. Plant J. 2017. PMID: 27995664 Free article.

6

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans.

Snoek BL, Sterken MG, Hartanto M, van Zuilichem AJ, Kammenga JE, de Ridder D, Nijveen H. Snoek BL, et al. Among authors: de ridder d. Database (Oxford). 2020 Jan 1;2020:baz149. doi: 10.1093/database/baz149. Database (Oxford). 2020. PMID: 31960906 Free PMC article.

7

Prior Biological Knowledge Improves Genomic Prediction of Growth-Related Traits in Arabidopsis thaliana.

Farooq M, van Dijk ADJ, Nijveen H, Aarts MGM, Kruijer W, Nguyen TP, Mansoor S, de Ridder D. Farooq M, et al. Among authors: de ridder d. Front Genet. 2021 Jan 20;11:609117. doi: 10.3389/fgene.2020.609117. eCollection 2020. Front Genet. 2021. PMID: 33552126 Free PMC article.

8

Prioritizing candidate eQTL causal genes in Arabidopsis using RANDOM FORESTS.

Hartanto M, Sami AA, de Ridder D, Nijveen H. Hartanto M, et al. Among authors: de ridder d. G3 (Bethesda). 2022 Nov 4;12(11):jkac255. doi: 10.1093/g3journal/jkac255. G3 (Bethesda). 2022. PMID: 36149290 Free PMC article.

9

Genomic prediction in plants: opportunities for ensemble machine learning based approaches.

Farooq M, van Dijk ADJ, Nijveen H, Mansoor S, de Ridder D. Farooq M, et al. Among authors: de ridder d. F1000Res. 2022 Jul 18;11:802. doi: 10.12688/f1000research.122437.2. eCollection 2022. F1000Res. 2022. PMID: 37035464 Free PMC article.

10

Chasing breeding footprints through structural variations in Cucumis melo and wild relatives.

Demirci S, Fuentes RR, van Dooijeweert W, Aflitos S, Schijlen E, Hesselink T, de Ridder D, van Dijk ADJ, Peters S. Demirci S, et al. Among authors: de ridder d. G3 (Bethesda). 2021 Jan 18;11(1):jkaa038. doi: 10.1093/g3journal/jkaa038. G3 (Bethesda). 2021. PMID: 33561242 Free PMC article.

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